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UnknownThe target spectrum of SdsR small RNA in Salmonella.
Not available
S-EPMC5137417 | biostudies-literature
TranscriptomicsThe target spectrum of SdsR small RNA in Salmonella
Enteric model bacteria such as Escherichia coli and Salmonella enterica express hundreds of small non-coding RNAs (sRNAs), targets for most of which are yet unknown. Some of these sRNAs are remarkably well-conserved, indicating that that they serve cellular functions that go beyond the necessities o...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Salmonella enterica 
2016-01-25 | GSE77157 | GEO
TranscriptomicsDeregulation of growth-phase-dependent expression of SdsR causes cell death in Escherichia coli
RNA-seq analysis of cells with pulsed overexpression of SdsR Most small noncoding RNAs (sRNAs) are known to base pair with target mRNAs and regulate their stability or translation with the help of Hfq to trigger various changes in cell metabolism. SdsR (also known as RyeB), which is a member of the ...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2018-12-26 | GSE116435 | GEO
UnknownThe small RNA, SdsR, acts as a novel type of toxin in Escherichia coli.
Not available
S-EPMC6284582 | biostudies-literature
GenomicsDeregulation of growth-phase-dependent expression of SdsR causes cell death in Escherichia coli
Deregulation of growth-phase-dependent expression of SdsR causes cell death in Escherichia coli
PRJNA478509 | ENA
ProteomicsWhole-cell differential proteomics analysis of MG1655 Escherichia coli (Wild-type and mutants lacking the small regulatory RNA SdsR, OxyS or ZbiJ, or the RNA Chaperone Hfq) experiencing long-term nitrogen starvation in Gutnick minimal media.
Proteomics was carried out to compare the proteomes of wild-type MG1655 E coli with mutants lacking either prominent sRNA, SdsR, OxyS or ZbiJ, or lacking the ubiquitous RNA chaperone proteins hfq, in bacteria that had been exposure to long-term (24hr) nitrogen starvation in Gutnick minimal media. Th...
ORGANISM(S): Escherichia coli 
2024-05-24 | PXD045656 | Pride
Zbij Hfq E coli Oxys Nitrogen starvation Stationary phase Sdsr Srna 
TranscriptomicsCoordinate regulation of expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin expression in Escherichia coli
RNA-seq analysis of cells with an ryeA or sdsR promoter mutation In Escherichia coli, SdsR and RyeA, a unique pair of mutually cis-encoded sRNAs, act as toxin and antitoxin, respectively. They are located in the same intergenic region, but transcribed in bidirectional way. Expression of SdsR is reci...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2019-06-30 | GSE122921 | GEO
GenomicsCoordinate regulation of expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin expression in Escherichia coli
Coordinate regulation of expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin expression in Escherichia coli
PRJNA506920 | ENA
GenomicsSalmonella enterica subsp. enterica serovar Typhimurium str. SL1344
The target spectrum of SdsR small RNA in Salmonella
PRJNA309607 | ENA
TranscriptomicsRNA-seq analysis of MG1655 Escherichia coli (Wild-type and mutant lacking the small regulatory RNA SdsR) experiencing long-term nitrogen starvation in Gutnick minimal media
RNA-seq was carried out to compare the transcriptomes of wild-type MG1655 E coli with mutant lacking the prominent sRNA, SdsR, in bacteria that had been exposed to long-term (24hr) nitrogen starvation in Gutnick minimal media. The aim of this was to understand what the regulatory contribution of Sds...
ORGANISM(S): Escherichia coli K-12 
2023-12-01 | E-MTAB-13402 | biostudies-arrayexpress
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