Sort   by:  
 Page size 
ProteomicsMS Annika: A new Cross-Linking Search Engine
A cross linking mass spectrometry search engine was developed and implemented into Thermo Proteome Discoverer. The search engine is capable to handle several linker types as well as data input formats. To demonstrate its ability processing Bruker -ion mobility data, synthetic peptides (Beveridge, et...
ORGANISM(S): Streptococcus pyogenes ABC020006030 
2021-05-27 | PXD022772 | Pride
Xl-ms Proteome-discoverer Ion-mobility Search-engine 
GenomicsStudying heterogeneity in embryonic stem cells using the approach of search-engine
Studying heterogeneity in embryonic stem cells using the approach of search-engine
PRJNA792553 | ENA
GenomicsStudying heterogeneity in embryonic stem cells using the approach of search-engine
Here we designed a search-engine for single-cell epigenome profiles. We tested different application of search-engine using different data-sets including mESC scATAC-seq profile.
ORGANISM(S): Mus musculus 
2022-12-27 | GSE192644 | GEO
ProteomicsD-score - D-score: a search engine independent MD-score
Processing of the dataset of synthetic phosphopeptides by Savitzki et al. (MCP, 2011) using multiple search engines. Establishment of the D-score: a search engine independent MD-score.
ORGANISM(S): Homo sapiens (Human) 
2013-01-23 | PXD000021 | Pride
Localization score Phosphorylation Synthetic peptides 
ProteomicspGlyco3: Intact N- and O-glycopeptide search engine
Analyses of N- and O-glycopeptide using pGlyco3 as well as Byonic, MSFragger and MetaMorpheus. N-glycopeptides and O-Man glycopeptides of fission yeast and budding yeast are also analyzed using pGlyco3.
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Schizosaccharomyces Pombe (ncbitaxon:4896) 
2021-01-27 | MSV000086771 | MassIVE
GenomicsSearch Engine for Antimicrobial Resistance
Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface for rapidly detecting antimicrobial resistance genes directly from sequence data
PRJEB4647 | ENA
ProteomicsCan we boost N-glycopeptide identification confidence? Smart collision energy choice taking into account structure and search engine
We investigated how the structural features of N-glycopeptides and the choice of the search engine influence the optimal collision energy, delivering highest identification confidence. We carried out LC-MS/MS measurements using a series of collision energies on a large set of N-glycopeptides with bo...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) Homo Sapiens (ncbitaxon:9606) 
2023-10-14 | MSV000093110 | MassIVE
UnknownSearch Engine Gender Bias.
Not available
S-EPMC8187950 | biostudies-literature
UnknownHortGenome Search Engine, a universal genomic search engine for horticultural crops.
Not available
S-EPMC11165154 | biostudies-literature
ProteomicsThe choice of search engine for interpretation of immunopeptidomics datasets affects the sequencing depth and the extent of detected HLA allele-specific peptide repertoires
Standardisation of Immunopeptidomics experiments across laboratories is a pressing issue within the field, and currently a variety of different methods for sample preparation and data analysis tools are applied. Here, we compared different software packages commonly used to interrogate immunopeptido...
ORGANISM(S): Homo sapiens (Human) 
2024-08-27 | PXD023202 | Pride
Immunopeptidomics Search engine 
Sort   by:  
 Page size