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Proteomics (44)
Transcriptomics (30)
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Homo sapiens (34)
Mus musculus (15)
Arabidopsis thaliana (6)
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Caenorhabditis elegans (1)
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Ganoderma lucidum G.260125-1 (1)
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Severe acute respiratory syndrome coronavirus 2 (1)
Lactiplantibacillus pentosus (1)
Mycobacterium tuberculosis H37Rv (1)
Niphotrichum canescens (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (31)
iProX (29)
pride (13)
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Tissue

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Whole body (1)

Disease

Cocaine addiction (1)

Technology Type

Mass Spectrometry (13)
Shotgun proteomics (8)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
NMR spectroscopy (1)
Bottom-up proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (10)
Illumina HiSeq 4000 (4)
Q Exactive (2)
Liquid Chromatography MS - positive - reverse phase (2)
ScanArray 4000 [PerkinElmer] (1)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Orbitrap Exploris 480 (1)
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6550 Q-TOF LC-MS Agilent (1)
Bruker (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2022 (20)
2021 (17)
2020 (6)
2025 (5)
2024 (5)
2023 (5)
2009 (4)
2010 (3)
2006 (3)
2014 (2)
2026 (2)
2018 (2)
2016 (1)
2015 (1)
2013 (1)
2011 (1)
2007 (1)
2019 (1)

CHEBI ID

CHEBI:6650 (3)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15846 (2)
CHEBI:16958 (2)
CHEBI:17148 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17750 (2)
CHEBI:18012 (2)
CHEBI:28997 (2)
CHEBI:10072 (1)
CHEBI:10983 (1)
CHEBI:132476 (1)
CHEBI:132546 (1)
CHEBI:132948 (1)
CHEBI:132958 (1)
CHEBI:132983 (1)
CHEBI:133032 (1)
CHEBI:133077 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133456 (1)
CHEBI:133469 (1)
CHEBI:133515 (1)
CHEBI:133534 (1)
CHEBI:133675 (1)
CHEBI:134206 (1)
CHEBI:137271 (1)

Metabolite Name

2'-deoxyinosine (2)
Allantoin (2)
Beta-alanine (2)
Choline (2)
Glycine (2)
Hypoxanthine (2)
Putrescine (2)
Uracil (2)
()-1,2-Epoxyneomenthyl acetate (1)
()-6-Chlorotryptophan (1)
()-Tryptophan (1)
()-erythro-Isoleucine (1)
(+)-12-methyl myristic acid (1)
(1'R)-Nepetalic acid (1)
(10E)-8-Hydroxydodec-10-enoylcarnitine (1)
(10Z)-12-Hydroxyhexadecenoylcarnitine (1)
(12E)-10-Hydroxytetradec-12-enoylcarnitine (1)
(1R,2R,4R,5S)-()-p-Menthane-2,5-diol (1)
(2-Acetyloxy-3-hydroxypropyl) (E)-octadec-9-enoate (1)
(2-Hydroxy-3-phosphonooxypropyl) octadec-9-enoate (1)
(22R,23R)-22,23-dihydroxy-campest-4-en-3-one (1)
(2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2R,4R)-2-phenylthiazolidine-4-carboxylic acid (1)
(2S)-2-Hydroxy-2-(propan-2-yl)butanedioylcarnitine (1)
(2S,4S)-Pinnatanine (1)
(3R,5R)-7-[(1S,2R,3R,8S,8Ar)-3-hydroxy-2-methyl-8-(2-methylbutanoyloxy)-1,2,3,7,8,8a-hexahydronaphthalen-1-yl]-3,5-dihydroxyheptanoic acid (1)
(3S)-3-hydroxycyclocitral (1)
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one (1)
(3Z)-2-Propylpent-3-enoic acid (1)

First Public Date

2022 (2)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA from single cells (9)
ChIP-chip by array (2)
Cell line - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
Plant - One-color microarray (1)
Animal - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2025 (115)
2022 (98)
2024 (85)
2023 (81)
2021 (59)
2020 (53)
2019 (25)
2016 (20)
2014 (18)
2018 (18)
2026 (15)
2017 (14)
2015 (12)
2013 (11)
2009 (7)
2010 (4)
2006 (4)
2011 (3)
2012 (2)
2007 (1)
2008 (1)
2004 (1)
1998 (1)

Lab affiliation

1. Gavin Herbert Eye Institute - Center for Translational Vision Research, Department of Ophthalmology, University of California Irvine, CA, 92697, USA 2. Department of Physiology and Biophysics, School of Medicine, University of California Irvine, CA (1)
Cell and Chemical Biology Leiden University Medical Center, LUMC The Netherlands (1)
Department of Medicine, Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA (1)
Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany (1)
Department of Pharmacology, Penn State College of Medicine, Hershey, PA, USA (1)
Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China (1)
Dezhou University (1)
Immunology Unit, Department of Microbiology, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand (1)
Mass Spectrometry Technology Access Center at McDonnell Genome Institute (MTAC@MGI) at Washington University School of Medicine (1)
National Center for Protein Science, Beijing (1)
Shanghai Key Laboratory of Tuberculosis, Clinic and Research Center of Tuberculosis,Shanghai Pulmonary Hospital, Tongji University School of Medicine (1)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing, China. (1)
The Key Laboratory of Resistance Genetic Engineering and Coldland Biodiversity Conservation, College of Life Sciences, Agriculture and Forestry (1)

Tags

xref:PubMed:35154017 (1)

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Gua Sha Alleviates Radiculitis-Induced Pain Via HIF-1α-Mediated Metabolic Reprogramming Pathway in Rats.

Not available

S-EPMC11932754 | biostudies-literature

Microarray analysis of Bay-0 x Sha recombinant inbred lines at four seed germination stages

Seed germination is characterized by a constant change of gene expression across different time points. These changes are related to specific processes, which eventually determine the onset of seed germination. To get a better understanding on the regulation of gene expression during seed germinatio...

ORGANISM(S): Arabidopsis thaliana

2020-06-24 | E-MTAB-9080 | biostudies-arrayexpress

Homologous genes shared between probiotics and pathogens affected the adhesion of probiotics and exclusion of pathogens in gut mucus

Clarifying mechanisms underlying the selective adhesion of probiotics and competitive exclusion of pathogens in the intestine is a central theme of maintaining host health.

ORGANISM(S): Lactiplantibacillus pentosus

2023-07-20 | PXD036035 | Pride

Lactobacillus pentosus Probiotics

Transcription profiling of Arabidopsis treated with silwet for varying time and high throughout haplotyping and single feature polymorphism markers in Arabidopsis

The study of natural genetic variation for plant disease resistance responses is a complementary approach to utilizing mutants to elucidate genetic pathways. While some key genes involved in pathways controlling disease resistance, and signaling intermediates such as salicylic acid (SA) and jasmoni...

ORGANISM(S): Arabidopsis thaliana

2006-11-14 | E-TABM-60 | biostudies-arrayexpress

Comparative metagenomic characterization of gut microbiota and antibiotic resistome in multi-facility SPF mice.

Not available

S-EPMC12947448 | biostudies-literature

Exploration on survived mice after sepsis and proteomic analy-sis on LPS-activated macrophages supports the regulation of sepsis hyper-inflammation by intravenous immunoglobulin

Because the immune regulation in survivor after sepsis (an immune dysregulation from severe infection) might be applied for treatment, survivors and moribund mice after cecal liga-tion and puncture (CLP) and in vitro experiments on macrophages were explored. Most of the parameters in survivors (5-da...

ORGANISM(S): Mus musculus (Mouse)

2022-02-22 | PXD027471 | Pride

Sepsis clp macrophages proteomic analysis ivig

A Mixed Flavonoid-Fish Oil Supplement Induces Immune-Enhancing and Anti-Inflammatory Transcriptomic Changes in Adult Obese and Overweight Women-A Randomized Controlled Trial.

Not available

S-EPMC4882690 | biostudies-literature

Deciphering potential pharmacological mechanism of Sha-Shen-Mai-Dong decoction on primary Sjogren's syndrome.

Not available

S-EPMC7923330 | biostudies-literature

Reduced representation bisulfite sequencing data of mouse genome

RRBS was used to analyse global imprinting gene methylation pattern of offspring from the in vitro derived spermatids like cells and normal control Global imprinting gene methylation pattern comparision of two offspring (one male and one female) from the in vitro derived spermatids like cells and tw...

ORGANISM(S): Mus musculus

2016-02-26 | E-GEOD-76238 | biostudies-arrayexpress

Analysis Report on Chemical Components and Blood-Entering Components of BSHX

Chemical Component Identification of the "BSHX" Based on UHPLC-Q-Orbitrap HRMS Technology

ORGANISM(S): Gynochthodes Officinalis Glycyrrhiza Uralensis Angelica Dahurica Var. Formosana Cuscuta Chinensis Var. Chinensis Astragalus Mongholicus Var. Dahuricus Rehmannia Glutinosa Ligusticum Chuanxiong Achyranthes Bidentata

2026-04-16 | PXD077284 |

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