Shannon J J - OmicsDI

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Unknown (1853)
Transcriptomics (81)
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Homo sapiens (76)
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Vibrio cholerae O1 biovar El Tor str. N16961 (1)

Organisms

Homo sapiens (3)
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Repository

biostudies-arrayexpress (83)
pride (39)
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Technology Type

Mass Spectrometry (39)
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Instrument Platform

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2020 (14)
2014 (9)
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2008 (9)
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2016 (1)

CHEBI ID

CHEBI:15354 (3)
CHEBI:15611 (3)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:15760 (3)
CHEBI:16040 (3)
CHEBI:16449 (3)
CHEBI:16750 (3)
CHEBI:16811 (3)
CHEBI:17015 (3)
CHEBI:17154 (3)
CHEBI:17311 (3)
CHEBI:17368 (3)
CHEBI:17553 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:18012 (3)
CHEBI:18257 (3)
CHEBI:18300 (3)
CHEBI:22653 (3)
CHEBI:22660 (3)
CHEBI:25017 (3)
CHEBI:27266 (3)
CHEBI:27897 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:28867 (3)
CHEBI:78320 (3)
CHEBI:7916 (3)
CHEBI:14336 (2)

Metabolite Name

Adenine (2)
Alanine (2)
Arabinose (2)
Aspartate (2)
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Choline (2)
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IsPrivate

False (3)

First Public Date

2024 (4)
2022 (2)
2021 (1)
2020 (1)
2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (34)
Unknown experiment type (27)
RNA-seq of coding RNA (9)
ChIP-chip by tiling array (3)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
Transcription profiling by SAGE (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (235)
2023 (230)
2022 (229)
2024 (215)
2021 (205)
2020 (125)
2018 (118)
2019 (116)
2017 (83)
2015 (54)
2010 (49)
2016 (49)
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2014 (43)
2012 (36)
2013 (29)
2011 (22)
2009 (21)
2008 (14)
2007 (5)
2006 (3)
2004 (3)
2005 (2)
2001 (2)

Lab affiliation

Institut Cochin, Inserm U 1016, CNRS UMR 8104, Université Paris Cité. (2)
Lund University, Faculty of Medicine, Department of Clinical Sciences Lund, Division of Infection Medicine, Lund, Sweden (2)
South China Agricultural University (2)
BPMP, CNRS, INRAE, Institut Agro, Univ Montpellier, 34060 Montpellier, France (1)
Baylor College of Medicine, Houston, TX 77030 (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (1)
Charles University in Prague, Faculty of Science Department of Parasitology Biocev, Průmyslová 595, Vestec 252 42 (1)
Cornell University (1)
Departamento de Fisiologia, Laboratório de Fisiologia da Nutrição, Universidde Federal de São Paulo, Brasil (1)
Department of Biochemistry, Mass Spectrometry Research Center, Vanderbilt University (1)
Department of Cancer Sciences, Cleveland Clinic, 9500 Euclid Avenue, NE60, Cleveland, OH, 44195, USA. (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, D-17489 Greifswald, Germany. (1)
Department of Microbiology and Immunology University of Michigan Medical School 1150 West Medical Center drive 6744 Med Sci II Ann Arbor, MI 48109 Phone: 734-764-3552 (1)
Department of Psychiatry, Yale University School of Medicine, New Haven, CT (1)
Dept. of Radiation Oncology, Medical Sciences I, B146B, University of California Irvine, CA 92697-2695 (1)
Functional Proteomics Genome Biology Unit European Molecular Biology Laboratory Heidelberg, Germany (1)
Hans Merensky Chair in Avocado Research, Department of Biochemistry, Genetics and Microbiology, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Head of the Mass Spectrometry platform of the Institut Curie (LSMP) (1)
Heidelberg University, Center for Organismal Studies (COS) Heidelberg, Department of Developmental Biology, Heidelberg, Germany (1)
Huazhong Agricultural University (1)
Indiana University School of Medicine, Dept of Pediatrics; Herman B Wells Center for Pediatric Research (1)
Instituto de Ecologia, A.C. (INECOL). Red de Estudios Moleculares Avanzados (1)
Korea Brain Research Institute, Daegu, 41068, Korea (1)
Laboratory for Cell Biology and Signalling, Division of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia (1)
Laboratory for Medical Mass spectrometry Aalborg University Fredrik Bajersvej 3B 9220 Aalborg (1)
Laboratory of Neuroproteomics - Unicamp (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Mount Sinai Hospital (Lab Head) (1)

Tags

xref:PubMed:18721163 (1)

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Shannon Entropy as an Indicator for Sorting Processes in Hydrothermal Systems.

Not available

S-EPMC7517191 | biostudies-literature

Quantifying Information via Shannon Entropy in Spatially Structured Optical Beams.

Not available

S-EPMC8605402 | biostudies-literature

T-Cell Receptor Profiling and Prognosis After Stereotactic Body Radiation Therapy For Stage I Non-Small-Cell Lung Cancer.

Not available

S-EPMC8559517 | biostudies-literature

Direct measurement of weakly nonequilibrium system entropy is consistent with Gibbs-Shannon form.

Not available

S-EPMC5651767 | biostudies-literature

Identification of kinase activity in ischemic heart disease

We performed discovery proteomics and phosphoproteomics analysis of human heart tissue to identify possibly hyperactive pathways in ischemic heart disease.

ORGANISM(S): Homo sapiens (Human)

2023-03-11 | PXD024727 | Pride

High-throughput sequencing and analyses of the TCR repertoire

We co-cultured T cells with Mo-DCs exposed to ConA for 24 h and used multiplex PCR and next-generation sequencing to detect the TCRα repertoire.The length of the amino acids of CDR3 in each group was 4–59 amino acids, and all presented a normal distribution. Moreover, the length of the amino acids o...

ORGANISM(S): Homo sapiens

2022-05-15 | GSE163933 | GEO

Shannon entropy for time-varying persistence of cell migration.

Not available

S-EPMC8390873 | biostudies-literature

Isoproterenol increases the fraction of spark-dependent RyR-mediated leak in ventricular myocytes.

Not available

S-EPMC3591256 | biostudies-literature

Halobacterium NRC-1 General transcription factor perturbation

Halobacterium cells, specified general transcription factor knock-out strains or plasmid expressed 6-His tagged general transcription factor strains, were grown to mid-log phase. RNA extractions were performed using the Stratagene Absolutely RNA Miniprep Kit and RNA quality checked with the Agilent...

ORGANISM(S): Halobacterium sp. NRC-1

2010-05-27 | E-GEOD-7713 | biostudies-arrayexpress

Tracking volcanic explosions using Shannon entropy at Volcan de Colima.

Not available

S-EPMC10276871 | biostudies-literature

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