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TranscriptomicsDifferential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori
In this study transcriptional start sites (TSS) for H. pylori 26695 were determined To detect the complement of transcripts expressed from H. pylori, we collected three independent biological replicates (B1 – B3) from 26695 wild type strain grown to mid-exponential (OD 600 ~0.6) phase under microaer...
ORGANISM(S): Helicobacter pylori 26695 
2015-07-01 | E-GEOD-67564 | biostudies-arrayexpress
GenomicsChIP-seq analysis of H-NS in Acinetobacter baumannii AB5075
The experiment contains ChIP-seq data for Acinetobacter baumannii strain AB5075 encoding 3xFLAG tagged H-NS. Experiments were done with or without ectopic expression of the truncated H-NS-39 protein (corresponding to the H-NS multimerization surface). The strain was grown at 37 degrees in LB medium ...
ORGANISM(S): Acinetobacter baumannii 
2024-07-15 | E-MTAB-13790 | biostudies-arrayexpress
UnknownNFAT and CREB regulate Kaposi's sarcoma-associated herpesvirus-induced cyclooxygenase 2 (COX-2).
Not available
S-EPMC3004349 | biostudies-literature
TranscriptomicsH. salinarum TrmB dynamics
Previous work characterized TrmB as a global glucose responsive metabolic transcription factor in archaeal extremophiles. However, it remains unclear how TrmB dynamically regulates its ~100 metabolic enzyme-coding genes. Using a dynamic perturbation approach, we elucidate the topology of the metabol...
ORGANISM(S): Halobacterium sp. NRC-1 
2013-08-07 | E-GEOD-47201 | biostudies-arrayexpress
TranscriptomicsRosR is a haloarchaeal-specific transcription factor required for the response to extreme oxidative stress in Halobacterium salinarum NRC-1.
Previous work has shown that the hypersaline-adapted archaeon, Halobacterium salinarum NRC-1, is highly resistant to oxidative stress caused by exposure to hydrogen peroxide, UV and gamma radiation. Genome-wide dynamics alteration of gene the GRN has been implicated in such resistance. However, the...
ORGANISM(S): Halobacterium sp. NRC-1 
2012-08-12 | E-GEOD-33980 | biostudies-arrayexpress
ProteomicsHypothesis-generating Proteome Perturbation to Identify Molecular Modes of Drug Action: NEU-4438 and Acoziborole in the African Trypanosome
Aim of the project was to investigate drug induced proteomic changes in T. brucei within 6 h of treatment with NEU-4438 or SCYX-7158
ORGANISM(S): Trypanosoma brucei 
2023-03-11 | PXD036393 | Pride
Trypanosoma brucei Human african trypanosomiasis Drug-perturbome proteomics Silac Neu-4438 Acoziborole Scyx-7158 
UnknownH-NS is a bacterial transposon capture protein.
Not available
S-EPMC11335895 | biostudies-literature
UnknownEvidence for ~12-h ultradian gene programs in humans.
Not available
S-EPMC11325440 | biostudies-literature
TranscriptomicsRNA-seq of Gas muscle of fed and fasted (48 h) Wild type and Parkin knock out (Park2tm1Shn) mice with C57BL/6 background
In this study, we aimed to characterise differentially regulated genes and pathways in skeletal muscle of Parkin KO mice as compared to wild type upon fasting. Fed and 48 h fasted mice were sacrificed and their Gas muscles were dissected. Total RNA was isolated using mirVANA™ miRNA isolation kit as ...
ORGANISM(S): Mus musculus 
2022-09-30 | E-MTAB-12273 | biostudies-arrayexpress
Transcriptomics3C-seq analysis of Acinetobacter baumannii AB5075 in the presence and absence of H-NS-39
The experiment contains 3C-seq data for Acinetobacter baumannii strain AB5075 with different genetic alterations. The strain was grown at 37 degrees in LB medium and nucleoprotein was cross-linked using formaldehyde. Genomic DNA was isolated and digested with NlaIII before being ligated with T4 liga...
ORGANISM(S): Acinetobacter baumannii 
2024-07-15 | E-MTAB-13800 | biostudies-arrayexpress
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