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ProteomicsIn-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix
Background: The shells of various Haliotis species have served as models of invertebrate biomineralization and physical shell properties for more than 20 years. A focus of this research has been the nacreous inner layer of the shell with its conspicuous arrangement of aragonite platelets, resembling...
ORGANISM(S): Haliotis laevigata 
2018-06-18 | PXD009567 | Pride
Nacre Proteome Biomineralization Mantle transcriptome Shell organic matrix Prismatic layer 
ProteomicsProteomic analysis of the shell organic matrix of Spondylus Gaederopus
This work reports a comprehensive and integrated microstructural, biochemical and proteomics study on the shell matrix of Spondylus gaederopus, the Mediterranean thorny oyster. We investigate the skeletal matrix proteins which are involved in biomineralization and compare the identified Spondylus se...
ORGANISM(S): Spondylus gaederopus 
2020-03-31 | PXD016760 | Pride
Biomineralization Proteomics Shell proteins Mollusc shells 
ProteomicsProteomic analysis of larval and adult shell matrix proteins in Crassostrea nippona by LC-MS/MS
This project contains proteomic profiles of shell matrix proteins (SMPs) from the Iwagaki oyster Crassostrea nippona, covering both life stage-specific shells (D-stage larval and adult shell) and shell microstructure-specific layers (prismatic, foliated, and chalky layers of the adult shell). These ...
ORGANISM(S): Crassostrea nippona 
2026-02-09 | PXD064366 | Pride
Adult Oyster Shell Larva 
Proteomicsshell matrix protein of estuarine oyster (Crassostrea ariakensis) and Pacific oyster (Crassostrea gigas)
Studying the adaptive divergence of shellfish inhabiting different environments is crucial to predict the resilience of marine organisms to rapid climate change. Although the shell serves as the primary physical barrier against environmental change, the evolutionary adaptation of biomineralization i...
ORGANISM(S): Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Crassostrea ariakensis 
2026-03-29 | PXD053708 | Pride
Shell matrix proteins Oysters 
ProteomicsChiton shell proteome sheds light on stem-group mollusca with biomineralization toolkits
The appearance of hard mineralized exoskeletons is a critical leap for animal evolution and partially lead to the explosion of diverse animals during the Cambrian, for example, molluscs. A majority of molluscs have mineralized shells to protect themselves. Despite numerous studies that have studied ...
ORGANISM(S): Chiton stokesii 
2023-01-03 | PXD033490 | Pride
Mollusca  evolution  biomineralization  shell matrix proteins  proteomics 
ProteomicsShell protein degradation by TMT- LC-MS/MS
This study investigates the degradation of mineral-associated proteins from Spondylus gaederopus mollusc shell. We analysed intracrystalline proteins extracted from powdered shell samples that were artificially aged by heating at 110 °C for different time durations (0, 1, 2, 4, 8, 16, 24, 48, 96, 24...
ORGANISM(S): Spondylus gaederopus 
2021-11-25 | PXD025068 | Pride
Shells Protein degradation Quantitative proteomics Intracrystalline proteins 
ProteomicsShell Proteome of Nacre and Myostracum from Perna Viridis
the shell of P. viridis was analyzed and two shell layers with different morphologies and polymorphs were observed, which includes nacre and myostracum strongly attached by adductor muscles to the interior of the shell surface. In order to understand whether these two shell layers contain different ...
ORGANISM(S): Perna Viridis 
PXD010566 |
ProteomicsQuantitative Proteomic Profiling of Pinctada fucata Shell Nacre Defines a Solubility-based Type Classification of Shell Matrix Proteins
This project investigates the shell matrix proteome of the nacreous layer of the pearl oyster Pinctada fucata. Nacre powders were subjected to an optimized extraction workflow combining EDTA-mediated decalcification and SDS/DTT-based solubilization to obtain three fractions: EDTA-soluble matrix (ESM...
ORGANISM(S): Pinctada fucata 
2026-06-01 | PXD071717 | Pride
ProteomicsProteomic investigation of the blue mussel larval shell organic matrix
This study aims to characterize the larval shell proteome of the blue mussel for the first time and to compare it to adult mussel shell proteomes
ORGANISM(S): Mytilus edulis (Blue mussel) 
2022-03-17 | PXD013675 | Pride
Mussel larvae Shell matrix protein Biomineralization Organic matrix 
ProteomicsRepost of Proteomics characterization of barnacle shell matrix protein
Shell matrix proteins (SMPs) were extracted from A. amphitrite shells，and further redissolved in 8 M urea. A timsTOF Pro mass spectrometer (Bruker) was coupled to nanoElute (Bruker Daltonics) to perform LC-MS/MS analysis.
ORGANISM(S): Amphibalanus amphitrite (Striped barnacle) (Balanus amphitrite) 
2025-08-16 | PXD066948 | Pride
Timstof pro Shell matrix protein Barnacle 
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