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TranscriptomicsHigh-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2 [RNA-seq]
Pseudomonas putida mt-2 metabolizes m-xylene and other aromatic compounds through the enzymes encoded by the xyl operons of the TOL plasmid pWW0 along with other chromosomally-encoded activities. Tiling arrays of densely overlapping oligonucleotides were designed to cover every gene involved in this...
ORGANISM(S): Pseudomonas putida 
2016-07-07 | E-GEOD-71852 | biostudies-arrayexpress
TranscriptomicsHigh-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Pseudomonas putida 
2016-07-07 | E-GEOD-71853 | biostudies-arrayexpress
MetabolomicsRepurposing the orphan drug nitisinone to control the transmission of African trypanosomiasis
Tsetse transmit African trypanosomiasis, which is a disease fatal to both humans and animals. A vaccine to protect against this disease does not exist so transmission control relies on eliminating tsetse populations. Although neurotoxic insecticides are the gold standard for insect control, they neg...
2021-10-06 | MTBLS2166 | MetaboLights
UnknownMolecular characterization of Escherichia coli producing extended-spectrum β-lactamase CTX-M-14 and CTX-M-28 in Mexico.
Not available
S-EPMC10920525 | biostudies-literature
ProteomicsMOI analysis of purslane responses to salinity stress - roots
This project constructed a multiomics (proteome, metabolome, and transcriptome) database on the response of purslane (Portulaca oleracea L.) plants to salt stress and subsequently started to employ Single-omics (SOA) and Multi-omics Integration (MOI) strategies to characterize the molecular basis of...
ORGANISM(S): Portulaca oleracea 
2023-06-01 | PXD041628 | Pride
Portulaca oleracea Mult omics integration Salt stress 
ProteomicsMOI analysis of purslane responses to salinity stress - leaf
This project constructed a multiomics (proteome, metabolome, and transcriptome) database on the response of purslane (Portulaca oleracea L.) plants to salt stress and subsequently started to employ Single-omics (SOA) and Multi-omics Integration (MOI) strategies to characterize the molecular basis of...
ORGANISM(S): Portulaca oleracea 
2023-06-01 | PXD041627 | Pride
Portulaca oleracea Salinity stress Mult omics integration 
TranscriptomicsMethanol effect on an E. coli BW25113 strain expressing heterologous mdh and das enzymes during or after growth on xylose
In this project we used the strain E. coli BW25113 ΔfrmA::frt (Δ(araD-araB)567, ΔlacZ4787(::rrnB-3), λ-, rph-1, Δ(rhaD-rhaB)568, hsdR514, ΔfrmA(::frt)) from the Keio collection (Baba et al. 2006). The plasmid {pSEVA424_mdh-das} (Low-copy-number, lacIq/Ptrc promoter, RK2 ori, SmR) from Silva-Rocha et...
ORGANISM(S): Escherichia coli K-12 
2020-07-10 | E-MTAB-8909 | biostudies-arrayexpress
MetabolomicsComprehensive lipid analysis of green Arabica coffee beans by LC-HRMS/MS
Lipids play an important role in coffee bean development, coffee brew and in the effects of coffee on human health. They account for around 17% of the dry bean weight and encompass different classes and subclasses, mostly triacylglycerols (TAG) and a minor quantity of phospholipids (PL) and βN-alkan...
2021-11-19 | MTBLS1972 | MetaboLights
GenomicsIntegration of epigenetic and transcriptional mechanisms governs functional commitment versus plasticity of gd T cell subsets
gd T cells are major innate sources of interleukin-17 (IL-17) and interferon-g (IFN-g), which are differentially produced by two thymically-derived subsets segregated on CD27 expression. However, the molecular mechanisms that program the functional differentiation of gd cells remain incompletely und...
ORGANISM(S): Mus musculus 
2013-09-01 | E-GEOD-42098 | biostudies-arrayexpress
ProteomicsIxodes Scapularis tick saliva proteins sequentially secreted every 24h during blood feeding
Ixodes scapularis is the most medically important tick species and transmits five of the 14 reportable human tick borne diseases (TBD) in the USA. This study describes LC-MS/MS identification of 582 tick- and 83 rabbit proteins in saliva of I. scapularis ticks that fed for 24, 48, 72, 96, and 120h, ...
ORGANISM(S): Ixodes scapularis (Black-legged tick) (Deer tick) 
2015-12-11 | PXD003214 | Pride
Tick feeding physiology Tick saliva proteome Ixodes scapularis 
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