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MetabolomicsSerine and 1-carbon metabolism are required for HIF-mediated protection against retinopathy of prematurity
We determined which metabolic pathways are activated by hypoxia-inducible factor 1-mediated (HIF-1-mediated) protection against oxygen-induced retinopathy (OIR) in newborn mice, the experimental correlate to retinopathy of prematurity, a leading cause of infant blindness. HIF-1 coordinates the chang...
2019-07-05 | MTBLS856 | MetaboLights
TranscriptomicsMycobacterium tuberculosis whiB4 mutant expression
Comparison of gene expression profile of the whiB4 mutant strain of Mycobacterium tuberculosis with the wild type Mycobacterium tuberculosis H37RV Mtb WhiB4 mutant mRNA was compared with the mRNA of wtMtb H37RV under aerobic conditons Aerbic conditions OD600 nm of 0.4, MtbWhiB4KO vs wtMtb, biologica...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2012-07-23 | E-GEOD-37840 | biostudies-arrayexpress
ProteomicsInvestigating the proteomic content of extracellular vesicles from Taenia solium cysticerci
We have employed the stack gel method to analyze the proteomic content of EVs. Briefly, 50 ug of EVs sample was lysed using RIPA buffer with 1 mM PMSF for 10 minutes in ice with occasional vortexing. peptide solution was transferred to the tube containing 50 mM ammonium bicarbonate and the step with...
ORGANISM(S): Taenia Solium 
2026-08-26 | PXD042112 | JPOST Repository
ProteomicsSalmonella Typhimurium effector SseI regulates host peroxisomal dynamics to acquire lysosomal cholesterol for better intracellular growth
Intracellular Salmonella resides and multiplies in cholesterol-rich specialized compartment called Salmonella-containing vacuoles (SCVs) and avoids fusion with acidic lysosomes. Given, lysosomes are primary organelle that redistributes LDL derived cholesterol to other organelles; we questioned how l...
ORGANISM(S): Homo sapiens (Human) 
2024-10-28 | PXD055151 | Pride
Salmonella typhimurium Cholesterol Arf1 activation Peroxisome targeting sequence Peroxisomes 
UnknownDiagnostic significance of dysregulated miRNAs in T-cell malignancies and their metabolic roles
Not available
S-EPMC10448964 | biostudies-literature
ProteomicsProteomic study in sucrose secreting mutant of cyanobacterium Synechococcus elongatus PCC 7942.
We conducted proteomic analysis of a strain engineered for inducible secretion of sucrose.
ORGANISM(S): Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2) 
2022-03-21 | PXD027430 | Pride
Synechococcus elongatus (strain pcc 7942) (anacystis nidulans r2) 
UnknownA molecular sensor for cholesterol in the human serotonin1A receptor.
Not available
S-EPMC8302130 | biostudies-literature
UnknownChanges in gene expression in liver tissue from patients with fulminant hepatitis E.
Not available
S-EPMC4499345 | biostudies-literature
TranscriptomicsA single functional blast resistance gene Pi54 activates complex defense mechanism in Rice
To investigate the responses of resistance gene Pi54 at transcriptome level in blast resistant transgenic rice line TP-Pi54 during infection by Magnaporthe oryzae, we studied the co-expression analysis using microarray along with susceptible non-transgenic line Taipei 309 (TP). Suitable controls ...
ORGANISM(S): Oryza sativa Japonica Group 
2011-12-08 | E-GEOD-28308 | biostudies-arrayexpress
TranscriptomicsSingle-cell analysis of human fetal bone marrow
Toal 13 patient samples (Iliac or pyramidal cancellous) were collected with lung cancer who were pathologically diagnosed in Dazhou Central Hospital from June 2020 to January 2021. Patients were monitored by a professional orthopaedic surgeon in the interventional room prior to collecting the sample...
ORGANISM(S): Homo sapiens 
2022-11-27 | E-MTAB-11560 | biostudies-arrayexpress
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