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Unknown (4115)
Transcriptomics (131)
Proteomics (71)
Genomics (40)
Metabolomics (8)
Models (1)
Other (1)

Organisms

Andropogon gerardi (56)
Bacteria (56)
Bartonella quintana JK 31 (56)
Canis lupus familiaris (56)
Clavibacter nebraskensis NCPPB 2581 (56)
Homo sapiens (55)
Mus musculus (47)
Caenorhabditis elegans (10)
Pristionchus pacificus (8)
Apis mellifera (6)
Glycine max (4)
Polistes metricus (3)
Arabidopsis thaliana (3)
Taeniopygia guttata (2)
Saccharomyces cerevisiae (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Sus scrofa (2)
Plasmodium berghei (2)
Apis mellifera ligustica (1)
Catharanthus roseus (1)
Gasterosteus aculeatus (1)
synthetic construct (1)
Actinobacillus pleuropneumoniae (1)
Schizosaccharomyces pombe (1)
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Apis mellifera mellifera (1)
Solanum lycopersicum (1)
Escherichia coli (1)
Candida albicans (1)
Gallus gallus (1)

Organisms

Homo sapiens (5)
Escherichia coli (4)
Schizosaccharomyces pombe (1)
Plasmodium berghei (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (141)
pride (56)
ENA (17)
MassIVE (13)
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geo (7)
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Tissue

Blood cell (7)
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T-lymphocyte (1)

Disease

Disease free (4)
Plasmodium falciparum malaria (3)
Breast cancer (2)
COVID-19 (2)
Multiple myeloma (1)
Age related macular degeneration (1)
Azoospermia (1)
Colon cancer (1)
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Melanoma (1)
Myeloproliferative neoplasm (1)
Oligoasthenoteratozoospermia (1)
Pulmonary tuberculosis (1)
Skin squamous cell carcinoma (1)
Squamous cell carcinoma of the skin (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (38)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry (5)
Data-dependent acquisition (4)
Gel-based experiment (3)
SWATH MS (3)
Illumina HumanOmniExpress-12 v1., Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (7)
Orbitrap Fusion Lumos (5)
Q Exactive (4)
GeneChip 3000 7G (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Impact II (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
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MinION (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ FT (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
TSQ Quantiva (1)
Thermo Fischer-Orbitrap Fusion Tribrid (1)
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Bruker (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2012 (35)
2013 (19)
2014 (16)
2016 (15)
2020 (15)
2021 (14)
2010 (13)
2015 (11)
2008 (11)
2025 (11)
2017 (10)
2023 (10)
2011 (9)
2026 (7)
2024 (7)
2019 (6)
2009 (6)
2022 (6)
2018 (4)
2007 (2)
2005 (1)

CHEBI ID

CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:17234 (3)
CHEBI:16449 (3)
CHEBI:16737 (3)
CHEBI:74767 (2)
CHEBI:83501 (2)
CHEBI:37946 (2)
CHEBI:176478 (2)
CHEBI:176456 (2)
CHEBI:1606 (2)
CHEBI:2869 (2)
CHEBI:8087 (2)
CHEBI:90344 (2)
CHEBI:133532 (2)
CHEBI:68505 (2)
CHEBI:133185 (2)
CHEBI:133435 (2)
CHEBI:133066 (2)
CHEBI:133005 (2)
CHEBI:82942 (2)
CHEBI:133186 (2)
CHEBI:68447 (2)
CHEBI:28997 (2)
CHEBI:71182 (2)
CHEBI:71018 (2)
CHEBI:68449 (2)
CHEBI:84842 (2)
CHEBI:87986 (2)
CHEBI:46215 (2)

Metabolite Name

Lysine (2)
Glutamate (2)
Glucose (2)
Pyruvate (2)
Alanine (2)
Lactate (2)
Creatinine (2)
N,N,N-Trimethyl-L-alanyl-L-proline betaine (TMAP) (1)
4-quinolinecarboxylic acid (1)
N-acetyl glycoprotein (1)
Lipids (1)
Dimethylarginine; LC-tDDA; CE10 (1)
Ne,Ne-Dimethyl-lysine (1)
Tricarballylic acid (1)
Protocatechiuc acid 4-O-sulfate (1)
N2-Succinylglutamic acid (1)
5-Carboxy-2-deoxyuridine (1)
Methylgallic O-sulfate (1)
Dihydromaleimide beta-glucoside (1)
4-O-alpha-Galactopyranuronosyl-galacturonic acid (1)
3-hydroxy-3-(3-hydroxyphenyl)propanoic acid O-sulphate (1)
Cysteinosuccinic acid (1)
Galactose 6-sulfate (1)
3-Sulfooxybutanoic acid (1)
Glucose 6-sulfate (1)
Glycerophosphorylethanolamine (1)
4-Hydroxy-5-(dihydroxyphenyl)valeric acid O-sulphate (1)
Succinylserine (1)
3-O-sulfo-beta-galactose (1)
Sinapinic acid-O-sulfate (1)

IsPrivate

False (1)

First Public Date

2024 (8)
2025 (2)
2020 (2)
2019 (2)
2014 (2)
2021 (1)

Classification

bacteria (4)
protozoa (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (96)
RNA-seq of coding RNA (14)
ChIP-seq (13)
Methylation profiling by array (7)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (454)
2021 (428)
2023 (426)
2025 (394)
2024 (369)
2020 (336)
2019 (264)
2018 (215)
2016 (212)
2017 (209)
2015 (169)
2014 (154)
2012 (134)
2013 (123)
2011 (75)
2010 (69)
2026 (63)
2009 (52)
2008 (43)
2007 (25)
2006 (12)
2005 (8)
2004 (8)
2003 (4)
2002 (2)
2000 (2)
2001 (1)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

National Institute of Plant Genome Research, JNU Campus, Aruna Asaf Ali Marg, New Delhi-110067, India (3)
1. Proteomics Facility, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, the Netherlands; 2. Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH, Utrecht, the Netherlands (1)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
Biochemistry and Molecular Biologoy, University of British Columnbia, Canada (1)
Biological Engineering, CEHS, MIT (1)
Biotechnology Research and Innovation Council, National Institute of Biomedical Genomics (BRIC-NIBMG), Kalyani, 741251, India. (1)
Bradley Distinguished Professor Chair of Cancer Biology & Research Professor of Cell Biology Centre for Cancer Biology University of South Australia (1)
CSIR-CCMB (1)
Center for Addiction Research Department of Pharmacology and Toxicology The University of Texas Medical Branch Galveston, TX 77555 (1)
Center of Neurogenomics and Cognitive Research (CNCR), Department of Molecular and Cellular Neurobiology, Vrije Universiteit, Amsterdam, Netherlands (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Biochemistry, University of Calcutta (1)
Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, India (1)
Department of Cellular and Molecular Medicine, School of Medicine, University of California San Diego, La Jolla, CA. (1)
Department of Comparative Biology and Experimental Medicine, Faculty of Veterinary Medicine, University of Calgary; Hotchkiss Brain Institute, University of Calgary; Alberta Children’s Hospital Research Institute, University of Calgary (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Director (1)
Discovery Proteomics Facility University of Oxford Target Discovery Institute, NDMRB Oxford, OX3 7FZ (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (lab head) (1)
Experimental Systems Immunology Laboratory, Max-Planck Institute of Biochemistry, Martinsried, Germany. (1)
Experimental Systems Immunology, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
Functional Proteomics Lab, Dpt. Life Sciences, University of Siena, Italy (1)
Functional Proteomics, ICR (1)
Head of the Curie Institute's mass spectrometry platform (LSMP) (1)
Howard Hughes Medical Institute Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
Howard Hughes Medical Institute and Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute, 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
IMB Mainz, Germany (1)

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Inference of the haplotype effect in a matched case-control study using unphased genotype data.

Not available

S-EPMC2835450 | biostudies-literature

Maternal exposure to SSRIs or SNRIs and the risk of congenital abnormalities in offspring: A systematic review and meta-analysis.

Not available

S-EPMC10686472 | biostudies-literature

Establishment of a Long-Term Co-culture Assay for Mesenchymal Stromal Cells and Hematopoietic Stem/Progenitors.

Not available

S-EPMC7757360 | biostudies-literature

The histone demethylase Jmjd3 sequentially associates with the transcription factors Tbx3 and Eomes to drive endoderm differentiation

Here we show that T-box proteins team up with chromatin modifying enzymes to drive the expression of the key lineage regulator, Eomes during endodermal differentiation of embryonic stem (ES) cells. The Eomes locus is maintained in a transcriptionally poised configuration in ES cells. During early di...

ORGANISM(S): Mus musculus

2013-04-18 | E-GEOD-44764 | biostudies-arrayexpress

1H NMR Metabolomics Reveals Association of High Expression of Inositol 1, 4, 5 Trisphosphate Receptor and Metabolites in Breast Cancer Patients

1H NMR is used to detect alterations in metabolites and their linkage to metabolic processes in a number of pathological conditions including breast cancer. Inositol 1, 4, 5 trisphosphate (IP3R) receptor is an intracellular calcium channel known to regulate metabolism and cellular bioenergetics. Its...

2017-07-18 | MTBLS326 | MetaboLights

Transcriptional regulation of brain gene expression in response to a territorial intrusion

We investigated the transcriptomic response to territorial intrusion in four regions of the brain (telencephalon, diencephalon, cerebellum and brain stem) of a teleost fish, the threespined stickleback (Gasterosteus aculeatus). We tested the hypothesis that gene regulatory networks modulate the tran...

ORGANISM(S): Gasterosteus aculeatus

2012-11-21 | E-GEOD-32961 | biostudies-arrayexpress

Plasmodium berghei Gametocytogenesis

Transcriptional profiling of gametocyte non-producer lines in Plasmodium berghei Transcriptome of gametocyte non producer lines (natural and genetic KO) and parental (820) lines. The aim of the study was to identify key genes involved in the decision to commit to gametocytogenesis in Plasmodium ber...

ORGANISM(S): Plasmodium berghei

2013-12-13 | E-GEOD-53246 | biostudies-arrayexpress

About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature.

Not available

S-EPMC9976479 | biostudies-literature

MicroRNA microarray in atmpk3 and atmpk6 Arabidopsis mutants

MicroRNA microarray profiling was performed in Arabidopsis seedlings - Col-0, atmpk3 and atmpk6 mutants to uncover the roles of MPK3 and MPK6 in microRNA biogenesis pathway.

ORGANISM(S): Arabidopsis thaliana

2015-03-31 | E-MTAB-3404 | biostudies-arrayexpress

Burns from illegal cannabis oil manufacturing: a case series.

Not available

S-EPMC5878953 | biostudies-literature

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