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ProteomicsLeveraging Parameter Dependencies in High-Field Asymmetric Waveform Ion-Mobility Spectrometry and Size-exclusion Chromatography for Proteome-wide Crosslinking Mass Spectrometry_CLMS dataset
Ion mobility spectrometry shows great promise to tackle analytically challenging research questions by adding another separation dimension to liquid chromatography-mass spectrometry. The understanding of how analyte properties influence ion mobility has increased through recent studies but no clear ...
ORGANISM(S): Homo Sapiens (human) Cellular Organisms 
2022-12-16 | PXD022360 | JPOST Repository
ProteomicsLeveraging Parameter Dependencies in High-Field Asymmetric Waveform Ion-Mobility Spectrometry and Size-exclusion Chromatography for Proteome-wide Crosslinking Mass Spectrometry_protein ID dataset
Ion mobility spectrometry shows great promise to tackle analytically challenging research questions by adding another separation dimension to liquid chromatography-mass spectrometry. The understanding of how analyte properties influence ion mobility has increased through recent studies but no clear ...
ORGANISM(S): Homo Sapiens (human) 
2022-12-16 | PXD022341 | JPOST Repository
ProteomicsReliable identification of protein-protein interactions by crosslinking mass spectrometry_CLMS_sSDA_datasets
Crosslink mass spectrometry datasets on sulfo-SDA-crosslinked affinity-purified RNA polymerase binders from SPA-pulldowns in E. coli K12, on rpoB-SPA / nusG-SPA / yacL-SPA. Cleared E. coli lysate was added to anti-FLAG M2 beads to isolate binders to rpoB (RNA polymerase), nusG or yacL (RNA polymer...
ORGANISM(S): Escherichia Coli 
2021-04-14 | PXD024148 | JPOST Repository
ProteomicsReliable identification of protein-protein interactions by crosslinking mass spectrometry_AP-MS
Quantitative proteomics dataset on soluble, affinity-enriched proteins from SPA-pulldowns in E. coli K12, on rpoB-SPA / nusG-SPA / yacL-SPA. This data was used to identify proteins for enrichment analysis and subsequent crosslinking mass spectrometry search (DB creation). Cleared E. coli lysate was ...
ORGANISM(S): Escherichia Coli 
2021-04-14 | PXD024146 | JPOST Repository
ProteomicsReliable identification of protein-protein interactions by crosslinking mass spectrometry_CLMS_BS3&DSSO_datasets
Crosslink mass spectrometry dataset on soluble, SEC-fractionated high-molecular weight proteome of E. coli, crosslinked with BS3 or DSSO. This data was used to identify protein-protein interactions and to obtain information on protein (complex) topologies. In the end, the data was used for finding ...
ORGANISM(S): Escherichia Coli 
2021-04-14 | PXD019120 | JPOST Repository
ProteomicsReliable identification of protein-protein interactions by crosslinking mass spectrometry_Protein coelution
Quantitative proteomics dataset on soluble, SEC-fractionated high-molecular weight proteome of E. coli for protein coelution analysis. This data was used to identify proteins for a subsequent crosslinking mass spectrometry search (DB creation) and to correlate protein elution behaviour to validate/...
ORGANISM(S): Escherichia Coli 
2021-04-14 | PXD019004 | JPOST Repository
ProteomicsOxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics
Protein glycosylation, a complex and heterogeneous post-translational modification that is frequently dysregulated in disease, has been difficult to analyse at scale. Here we report a data-independent acquisition technique for the large-scale mass-spectrometric quantification of glycopeptides in pla...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-05-29 | MSV000089567 | MassIVE
ProteomicsCross-platform Clinical Proteomics using the Charite Open Standard for Plasma Proteomics (OSPP)
The role of plasma and serum proteomics in characterizing human disease, identifying biomarkers, and advancing diagnostic technologies is rapidly increasing. However, there is an ongoing need to improve proteomic workflows in terms of accuracy, reproducibility, platform transferability, and cost-eff...
ORGANISM(S): Homo sapiens (Human) 
2025-12-29 | PXD070765 | Pride
Lc-ms Dia Biomarker panel Mrm-hr Precision medicine Internal standard 
UnknownDevelopment and Validation of the Gene Expression Predictor of High-grade Serous Ovarian Carcinoma Molecular SubTYPE (PrOTYPE).
Not available
S-EPMC7572656 | biostudies-literature
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