Small regulatory rnas

Show results for

Unknown (2545)
Transcriptomics (2190)
Genomics (1352)
Proteomics (58)
Other (53)
Methylation profiling (9)
Metabolomics (2)
Models (1)

Organisms

Homo sapiens (952)
Mus musculus (489)
Drosophila melanogaster (187)
Arabidopsis thaliana (103)
Caenorhabditis elegans (94)
Rattus norvegicus (50)
Schizosaccharomyces pombe (37)
Oryza sativa (29)
Saccharomyces cerevisiae (25)
Danio rerio (22)
Staphylococcus aureus (22)
Sus scrofa (21)
Escherichia coli str. K-12 substr. MG1655 (21)
Gallus gallus (18)
Zea mays (18)
Vibrio harveyi (16)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (16)
Escherichia coli (16)
Bos taurus (14)
Triticum aestivum (12)
Methanococcus maripaludis S2 (11)
Medicago truncatula (5)
Oryza sativa Japonica Group (5)
Apostichopus japonicus (4)
Gossypium hirsutum (4)
Volvox carteri (4)
Bacillus subtilis subsp. subtilis str. 168 (4)
Macaca mulatta (4)
Chlamydomonas reinhardtii (4)
Mammalia (1)

Organisms

Homo sapiens (154)
Mus musculus (111)
Arabidopsis thaliana (37)
Caenorhabditis elegans (30)
Drosophila melanogaster (21)
Staphylococcus aureus (16)
Escherichia coli str. K-12 substr. MG1655 (14)
Escherichia coli K-12 (12)
Schizosaccharomyces pombe (11)
Escherichia coli (10)
Rattus norvegicus (10)
Oryza sativa (9)
Zea mays (9)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (8)
Vibrio harveyi (8)
Sus scrofa (7)
Saccharomyces cerevisiae (7)
Bos taurus (6)
Triticum aestivum (6)
Caulobacter vibrioides (4)
Borreliella burgdorferi (4)
Populus x canadensis (4)
Streptococcus pneumoniae D39 (4)
Vitis vinifera (4)
Pseudomonas aeruginosa (4)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (3)
Escherichia coli O157:H7 str. Sakai (3)
Lactococcus cremoris subsp. cremoris MG1363 (3)
Linum usitatissimum (3)
Capsicum annuum (3)

Repository

biostudies-arrayexpress (1941)
ENA (935)
geo (725)
pride (40)
MassIVE (10)
EGA (8)
iProX (8)
BioModels (1)
GNPS (1)
jPOST (1)
MetaboLights (1)

Tissue

Cell culture (8)
Cell suspension culture (2)
Epithelial cell (2)
Whole body (2)
Cell line cell (1)
Heart (1)
Hepatocyte (1)
Leaf (1)
Liver (1)
Lung (1)
Permanent cell line cell (1)
Photosynthetic cell (1)
Rosette (1)
Seedling (1)
Stem cell (1)

Disease

Normal (12)
Melanoma (4)
Breast adenocarcinoma (3)
Breast cancer (3)
Leukemia (2)
Toxicity (1)
Epithelioid mesothelioma (1)
Large cell carcinoma (1)
Invasive pituitary adenoma (1)
CUP (1)
Ependymoma (1)
Alveolar rhabdomyosarcoma (1)
Limited cutaneous subset (1)
Infected (1)
Bladder tumour (1)
Lung large cell carcinoma (1)
Bronchioloalveolar carcinoma of lung (1)
Gestational diabetes mellitus (1)
Colorectal cancer (1)
Disease controled patient (1)
Spinocerebellar ataxia type 1 (1)
Papillary thyroid carcinoma (1)
Nevus (1)
Viral myocarditis (1)
Acute Myeloid Leukemia (1)
Megakaryoblastic leukemia (1)
Disease controled patient (1)
Mammary tumor (1)
Acute promyelocytic leukemia (1)
Colorectal adenocarcinoma (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (10)
Bottom-up proteomics (9)
Data-dependent acquisition (6)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Ilumina HumanHap550-2v3_B-Beadstudio (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
Mass spectrometry (1)
All-ion fragmentation (1)
Gel-based experiment (1)
HDMSE (1)
Proteogenomics (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (18)
Illumina NovaSeq 6000 (15)
Illumina HiSeq 2000 (14)
NextSeq 500 (13)
Illumina Genome Analyzer IIx (8)
Illumina HiSeq 4000 (6)
GenePix 4000B [Axon Instruments] (4)
Illumina Genome Analyzer II (4)
Scanning hardware (4)
GenePix 4000A [Axon Instruments] (3)
NextSeq 550 (3)
Illumina HiSeq (2)
Axon GenePix 4000B scanning hardware (2)
Illumina NovaSeq X (2)
R (2)
Illumina MiSeq (2)
Illumina HiSeq Xten (1)
Computer (1)
GenePix 4000B [Axon] (1)
Retsch MM400 (1)
AB SOLiD 4 System (1)
2100 Bioanalyzer (1)
BD FACSAria III cell sorter (1)
ScanArray [PerkinElmer] (1)
ScanArray 5000 [PerkinElmer] (1)
418 [Affymetrix] (1)
G2565BA DNA microarray scanner [Agilent] (1)
ScanArray 4000XL [PerkinElmer] (1)
NA (1)
Illumina HiSeq X (1)

Publication Date

2014 (315)
2012 (303)
2010 (295)
2011 (292)
2013 (288)
2015 (255)
2016 (156)
2009 (120)
2008 (82)
2025 (80)
2021 (69)
2024 (61)
2019 (58)
2026 (55)
2017 (51)
2020 (49)
2018 (46)
2023 (42)
2022 (42)
2007 (36)
2004 (15)
2006 (11)
2005 (6)
2003 (1)

UNIPROT ID/AC

Q00534 (1)
P30281 (1)
P30279 (1)
Q01094 (1)
P24941 (1)
P11802 (1)
P06400 (1)
P24864 (1)
P24385 (1)
P01106 (1)

IsPrivate

False (1)

First Public Date

2013 (123)
2014 (103)
2025 (82)
2026 (74)
2024 (72)
2023 (64)
2021 (63)
2020 (61)
2018 (56)
2019 (54)
2017 (53)
2015 (48)
2016 (43)
2022 (38)
2011 (1)

Classification

bacteria (141)
fungi (6)
helminths (3)
viruses (3)
protozoa (2)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (925)
RNA-seq of non coding RNA (445)
RNA-seq of coding RNA (265)
Other (70)
ChIP-seq (68)
Transcription profiling by tiling array (31)
MicroRNA profiling by array (30)
RNAi profiling by array (13)
ChIP-chip by tiling array (12)
Transcription profiling by RT-PCR (11)
Unknown experiment type (8)
Methylation profiling by high throughput sequencing (6)
RNA-seq of total RNA (6)
MicroRNA profiling by high throughput sequencing (5)
Methylation profiling by array (5)
MicroRNA profiling by high-throughput sequencing (4)
ChIP-chip by array (4)
Comparative genomic hybridization by array (4)
Human - One-color microarray (3)
Cell line - High-throughput sequencing (3)
Ribo-seq (3)
RIP-seq (2)
Transcription profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
Cell line - Two-color microarray (1)
CLIP-Seq (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)

Release Date

2014 (420)
2013 (381)
2012 (359)
2015 (344)
2011 (323)
2010 (307)
2016 (253)
2022 (242)
2021 (234)
2020 (227)
2025 (187)
2019 (176)
2023 (172)
2009 (155)
2017 (152)
2024 (138)
2018 (137)
2008 (111)
2007 (66)
2026 (34)
2006 (24)
2004 (20)
2005 (16)
2003 (3)
2002 (3)
2001 (1)
2000 (1)

Lab affiliation

1Department of Biology, Swiss Federal Institute of Technology (ETH), Universitätstrasse 2, 8092 Zürich, Switzerland (1)
Biochemistry Centre Regensburg (BCR), Universität Regensburg, 93053 Regensburg, Germany (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Centre for Advanced Technology/ Adam Mickiewicz University, Poznań, Poland (1)
Clinical Proteomics Facility Medical Biochemistry Academic Medical Center, University of Amsterdam (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark (1)
Department of Biological Sciences, University of Southern California, Los Angeles CA (1)
Department of Biology, Johns Hopkins University, USA (1)
Department of Clinical Pharmacy, University of Michigan (1)
Department of Medicinal Chemistry, University of Michigan (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, D-17489 Greifswald, Germany. (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
Department of Oncology and Diagnostic Sciences, University of Maryland School of Dentistry, Baltimore MD (1)
Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland Baltimore (1)
Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD USA (1)
Department of Plant Physiology, University of Rostock, Einsteinstr. 3, D-18059 Rostock, Germany (1)
Genetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany (1)
Hebrew university, Jerusalem (1)
Institute of Bioorganic Chemistry Polish Academy of Sciences, Department of Molecular and Systems Biology, Poznan, Poland (1)
Institute of Microbiology, University of Greifswald, Germany (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
Institute of Molecular Biology Ackermannweg 4 55128 Mainz (1)
Interfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics, University Medicine Greifswald, Germany (1)
Laboratoire de Recherche en Sciences Végétales, CNRS/UPS, 31320 Auzeville-Tolosane, France (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic (1)
Molekulare Biotechnologie Fachbereich Biowissenschaften Buchmann Insitutee for Molecular Life Sciences Goethe Universität Frankfurt (1)
Peter Brodersen, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Qilu Hospital of Shandong University (1)
Senior Lecturer Department of Biology and Biochemistry University of Bath Claverton Down Bath BA2 7AY (1)

Previous page
1 / 622
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 622
Next page

Sort by:

Relevance

Page size

Endogenous small RNAs of meristematic and a terminally differentiated tissue of rice.

To address the role of small regulatory RNAs in rice development, we generated a large data set of small RNAs from root apices (RoApx), shoot apices (ShApx), developing inflorescence (Infl) and mature leaf (Leaf). These tissues were chosen because they are expected to be rich in small RNAs and displ...

ORGANISM(S): Oryza sativa

2009-06-07 | E-GEOD-16350 | biostudies-arrayexpress

Preliminary exploration of Oryza sativa small RNAs - Run 1 and 2

The small RNAs presented here were produced as a preliminary exploration of small RNAs in rice, and as such, various tissues and stress conditions were sampled. Small RNAs present in these samples were all mapped to the rice genome TIGR version 5. The total number of distinct mapped sequences are ...

ORGANISM(S): Oryza sativa

2009-06-07 | E-GEOD-16248 | biostudies-arrayexpress

The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs

Vault particles are conserved organelles that have been implicated in multidrug resistance and intracellular transport. They are formed by three different proteins and the non-coding vault RNAs (vRNAs). Here we show that human vRNAs produce several small RNAs (svRNAs) by mechanisms different from th...

ORGANISM(S): Homo sapiens

2009-09-07 | E-GEOD-16060 | biostudies-arrayexpress

A user-friendly chromatographic method to purify small regulatory RNAs

The discovery of the small regulatory RNA populations has changed our vision of cellular regulations. Indeed, loaded on Argonaute proteins they formed ribonucleoprotein complexes that target complementary sequences and achieved widespread silencing mechanisms conserved in most eukaryotes. The recent...

ORGANISM(S): Drosophila melanogaster

2013-06-13 | E-GEOD-40748 | biostudies-arrayexpress

Small regulatory RNA in the bovine genome

MicroRNA and other types of small regulatory RNAs play a crucial role in the regulation of gene expression in eukaryotes. Several distinct classes of small regulatory RNAs have been discovered in recent years. To extend the repertoire of small regulatory RNAs characterized in mammals and identify mi...

ORGANISM(S): Bos taurus

2009-07-28 | E-GEOD-15450 | biostudies-arrayexpress

Small RNAs from 4-week old seedling of Oryza sativa

In order to identify new miRNAs, NAT-siRNAs and possibly abiotic-stress regulated small RNAs in rice, three small RNA libraries were constructed from control rice seedlings and seedlings exposed to drought or salt stress, and then subjected to pyrosequencing. Totally three sets of small RNAs, which ...

ORGANISM(S): Oryza sativa

2008-12-08 | E-GEOD-12317 | biostudies-arrayexpress

Small RNAs from dcl3 and rdr6 mutants of Physcomitrella

Endogenous 24nt short interfering RNAs (siRNAs) derived mostly from intergenic and repetitive genomic regions constitute a major class of endogenous small RNAs in Arabidopsis thaliana. Accumulation of A. thaliana 24nt siRNAs requires the Dicer family member DCL3, and clear homologs of DCL3 exist in...

ORGANISM(S): Physcomitrella patens

2008-12-19 | E-GEOD-12468 | biostudies-arrayexpress

Next generation sequencing of small RNAs isolated from exosomes in human semen

Preparation of exosomes isolated from semen contain a substantial amount of RNA, mostly from 20 to 100 nucleotides in length. We sequenced separately 20-40 and 40-100 nucleotide fractions of RNA from exosomes isolated from semenal fluid from six healthy donors. We found various classes of small non...

ORGANISM(S): Homo sapiens

2014-06-04 | E-GEOD-56076 | biostudies-arrayexpress

Small RNAs in four Argonaute complexes in Arabidopsis

The core components of RNA silencing effector complexes include small RNAs and members of the Argonaute (AGO) protein family. Arabidopsis encodes ten AGOs and complex population of small RNAs. It remains largely unknown how these small RNAs are recognized and recruited by each AGO complex. Here we p...

ORGANISM(S): Arabidopsis thaliana

2008-04-05 | E-GEOD-10036 | biostudies-arrayexpress

Functional diversity and convergence of small non-coding RNAs in male germ cell differentiation and fertilization (piRNA and endo-siRNAs)

The small non-coding RNAs (sncRNAs) are considered as postranscriptional key regulators of male germ cell development. In addition to microRNAs (miRNAs) and PIWI-interacting RNAs (piRNAs), other sncRNAs generated from small nucleolar RNAs (snoRNAs), tRNAs or rRNAs processing may also play important ...

ORGANISM(S): Mus musculus

2015-03-26 | E-GEOD-59254 | biostudies-arrayexpress

Previous page
1 / 622
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 622
Next page

Sort by:

Relevance

Page size

6216 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

IsPrivate

First Public Date

Classification

Modelling Approach

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets