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UnknownSystematic identification of smORFs in domestic silkworm (Bombyx mori).
Not available
S-EPMC9841908 | biostudies-literature
ProteomicsIdentification of novel smORFs acting in response to rehydration of Nostoc flagelliforme
Nostoc flagelliforme is able to recover biological activities within hours from months of anhydrobiosis state. In this work, we first constructed a smORF database, and analyzed the proteome of N. flagelliforme over rehydration.
ORGANISM(S): Nostoc Flagelliforme 
2022-11-11 | PXD038096 |
ProteomicsImproved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides
Computational, genomic, and proteomic approaches have been used to discover nonannotated proteincoding small open reading frames (smORFs). Some novel smORFs have crucial biological roles in cells and organisms, which motivates the search for additional smORFs. Proteomic smORF discovery methods are a...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-26 | MSV000084014 | MassIVE
ProteomicsLarge-scale proteogenomics characterization of the Mycobacterium tuberculosis hidden proteome
Traditional genome annotation methods exclude Open Reading Frames shorter than 300 codons (smORFs), which leaves a substantial portion of the proteome overlooked. Proteogenomics is a multi-omics approach that merges genomics, transcriptomics and proteomics to identify proteoforms and unannotated pro...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2025-05-06 | PXD042958 | Pride
Proteogenomics Microproteins Tuberculosis Small orfs 
ProteomicsIdentification of the endothelial cell microproteome
Non-canonical small open reading frames (smORFs) that encode microproteins (miPs; <100 amino acids) are present in the genome. However, the study of smORF-encoded miPs has been hampered by technical challenges associated with the detection of small peptides by mass spectrometry. Here we combined dee...
ORGANISM(S): Homo sapiens (Human) 
2026-08-24 | PXD031328 | Pride
Small open reading frame Microprotein Endothelial cell 
ProteomicsIdentification of the endothelial cell microproteome - miPs in serum TASH patients
Non-canonical small open reading frames (smORFs) that encode microproteins (miPs; <100 amino acids) are present in the genome. However, the study of smORF-encoded miPs has been hampered by technical challenges associated with the detection of small peptides by mass spectrometry. Here we combined dee...
ORGANISM(S): Homo sapiens (Human) 
2026-08-24 | PXD032005 | Pride
Small open reading frame Microprotein Endothelial cell 
ProteomicsIdentification of the endothelial cell microproteome - RCA vs. LCA RiboTagEC mouse
Non-canonical small open reading frames (smORFs) that encode microproteins (miPs; <100 amino acids) are present in the genome. However, the study of smORF-encoded miPs has been hampered by technical challenges associated with the detection of small peptides by mass spectrometry. Here we combined dee...
ORGANISM(S): Mus musculus (Mouse) 
2026-08-24 | PXD031363 | Pride
Small open reading frame Microprotein Endothelial cell 
ProteomicsIdentification of the endothelial cell microproteome – smoRFeomeµpproteome HUVEC
Non-canonical small open reading frames (smORFs) that encode microproteins (miPs; <100 amino acids) are present in the genome. However, the study of smORF-encoded miPs has been hampered by technical challenges associated with the detection of small peptides by mass spectrometry. Here we combined dee...
ORGANISM(S): Homo sapiens (Human) 
2026-08-24 | PXD032109 | Pride
Small open reading frame Microprotein Endothelial cell 
ProteomicsIdentification of the endothelial cell microproteome - miPs in cell culture supernatant
Non-canonical small open reading frames (smORFs) that encode microproteins (miPs; <100 amino acids) are present in the genome. However, the study of smORF-encoded miPs has been hampered by technical challenges associated with the detection of small peptides by mass spectrometry. Here we combined dee...
ORGANISM(S): Homo sapiens (Human) 
2026-08-24 | PXD032004 | Pride
Small open reading frame Microprotein Endothelial cell 
TranscriptomicsAccurate annotation of human protein-coding small open reading frames
Protein-coding small open reading frames (smORFs) are emerging as an important class of genes, however, the coding capacity of smORFs in the human genome is unclear. By integrating de novo transcriptome assembly and Ribo-Seq, we confidently annotate thousands of novel translated smORFs in three huma...
ORGANISM(S): Homo sapiens 
2019-07-03 | GSE125218 | GEO
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