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ProteomicsIdentification of arginine methylation in Snf2
In this study, we performed mass spectrometry analysis of the Snf2 mutant to identify methylation sites modified by Set1 complex.
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2026-08-13 | PXD061448 | Pride
Snf2 Mass spectrometry Methylation 
ProteomicsSnf2 post-translational modifications in either WT or set1∆ strains
Set1 is the catalytic subunit of an evolutionarily conserved complex, SET1C or COMPASS, which methylates histone H3 at lysine 4 and serves as a scaffold for the association of seven tightly bound polypeptides: Swd1, Swd2, Swd3, Bre2, Sdc1, Spp1, and Shg1. Our results reveal that Set1 interacts with ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2026-09-21 | PXD061531 | Pride
Ptm Snf2 Lc-msms 
TranscriptomicsA new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling
The in vivo role of a novel domain in Swi2/Snf2 required for its function was investigated using microarray analysis. The effect of domain deletions of Swi2/Snf2 on expression changes were studied. The ?SnAC strain, along with ?snf2 and wild type strains (BY4741 and Snf2-2FLAG, PSY2), were analyzed ...
ORGANISM(S): Saccharomyces cerevisiae 
2011-09-14 | E-GEOD-30675 | biostudies-arrayexpress
ProteomicsSnf2 interactome in either WT or set1∆ strains
Set1 is the catalytic subunit of an evolutionarily conserved complex, SET1C or COMPASS, which methylates histone H3 at lysine 4 and serves as a scaffold for the association of seven tightly bound polypeptides: Swd1, Swd2, Swd3, Bre2, Sdc1, Spp1, and Shg1. Our results reveal that Set1 interacts with ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2026-09-21 | PXD061496 | Pride
Snf2 Lc-ms-ms Saccharomyces cerevisiae 
GenomicsThe SNF2-like helicase HELLS mediates E2F3-dependent transcription and cellular transformation
The activating E2F-transcription factors are best known for their dependence on the Retinoblastoma protein and their role in cellular proliferation. E2F3 is uniquely amplified in specific human tumours where its expression is inversely correlated with the survival of patients. Here, E2F3 interaction...
ORGANISM(S): Mus musculus 
2011-12-19 | E-GEOD-33791 | biostudies-arrayexpress
TranscriptomicsThe SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis [mRNA-Seq]
DNA methylation in Arabidopsis thaliana is maintained by at least four different enzymes: MET1, CMT3, DRM2, and CMT2. However, DNA methylation is established exclusively by the enzyme DRM2, which acts in the RNA-directed DNA methylation (RdDM) pathway. Some RdDM components belong to gene families an...
ORGANISM(S): Arabidopsis thaliana 
2014-11-25 | E-GEOD-62799 | biostudies-arrayexpress
GenomicsA role for Snf2 related nucleosome spacing enzymes in genome-wide nucleosome organization
The positioning of nucleosomes within the coding regions of eukaryotic genes is aligned with respect to transcriptional start sites. This organization is likely to influence many genetic processes, requiring access to the underlying DNA. Here we show that the combined action of Isw1 and Chd1 nucleos...
ORGANISM(S): Saccharomyces cerevisiae 
2011-09-16 | E-GEOD-31015 | biostudies-arrayexpress
GenomicsThe SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2014-11-25 | E-GEOD-62801 | biostudies-arrayexpress
TranscriptomicsNucleosomal occupancy in a SNF2 deletion
Nucleosomal preparations generated by micorcoccal nuclease digestion were analyzed on Affymetrix tiling arrays to determine changes in occupancy after deletion of the SNF2 gene
ORGANISM(S): Saccharomyces cerevisiae 
2011-04-08 | E-TABM-1141 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Arabidopsis seedlings mutant for essp3 and brm
Synthesis and accumulation of seed storage proteins (SSPs) is an important aspect of the seed maturation program. Genes encoding SSPs are specifically and highly expressed in the seed during maturation. However, the mechanisms that repress the expression of these genes in leaf tissue are not well un...
ORGANISM(S): Arabidopsis thaliana 
2009-02-07 | E-GEOD-11505 | biostudies-arrayexpress
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