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ProteomicsMicrobial functionality as affected by experimental warming of a temperate mountain forest soil - a metaproteomics survey
Soils are a huge reservoir of organic C, and the efflux of CO2 from soils is one of the largest fluxes in the global C cycle. Out of all natural environments, soils probably contain the greatest microbial biomass and diversity, which classifies them as one of the most challenging habitats for microb...
ORGANISM(S): uncultured soil microorganism 
2022-03-14 | PXD004428 | Pride
Soil microbial diversity Microbial community functionality Soil warming 
ProteomicsMediterranean grassland soil C-N compound turnover is mediated by genomically novel organisms, depth stratified, and rainfall dependent
integrated soil metagenomics and metaproteomics to study grassland soil microbial communities
ORGANISM(S): soil bacterium TS1114R 
2019-03-27 | PXD013110 | Pride
C-n compound Microbial communities Soil Metaproteomics 
ProteomicsStrategies for the interpretation of soil metaproteomic data
Evaluation of different strategies to interpret metaproteomics data acquired on soil samples from a floodplain along the Seine River (France) incorporating sample-specific metagenomics data, soil genome catalogue database, and generic sequence database.
ORGANISM(S): Eukaryota (eucaryotes) Bacteria Archaea Viruses 
2022-02-17 | PXD026798 | Pride
Metaproteomics Mags Metagenomics Soil Bioinformatics Sediment 
ProteomicsProteome data on soil microbial community
Soil microbial community is a complex blackbox that requires a multi-conceptual approach (Hultman et al., 2015; Bastida et al., 2016). Most methods focus on evaluating total microbial community and fail to determine its active fraction (Blagodatskaya & Kuzyakov 2013). This issue has ecological conse...
ORGANISM(S): Escherichia coli 
2021-02-02 | PXD005447 | Pride
Metaproteomics Soil Microbial community 
ProteomicsSoil Metaproteome - proteome data analysis
Phosphorus (P) limitation will play a key role in the productivity of agriculture in the coming decades. Struvite is an ammonium magnesium phosphate mineral that can be recovered from wastewater-treatment plants and can be considered as an alternative source of P. However, the impact of struvite on ...
ORGANISM(S): Escherichia coli 
2019-03-13 | PXD009595 | Pride
Lc-ms Agriculture Soil microbiome 
ProteomicsMulti-omics of the initial soil communites
characterization of soil communities with metagenomics and metaproteomics
ORGANISM(S): uncultured soil bacterium S0164 
2018-11-21 | PXD011738 | Pride
Metaproteomics Soil microbial communities 
ProteomicsSoil metaproteomics using DNA RNA protein co-extraction method
Soil is an inherently complex matrix and as such, we believe when performing culture-independent microbial community analyses using the 'omics' suite of tools, all biomolecules investigated should be co-extracted from the same biological sample. To this end, we developed a robust, cost-effective DNA...
ORGANISM(S): environmental samples 
2019-07-15 | PXD007077 | Pride
Soil metaproteomics lc ms/ms 
ProteomicsSoil Metaproteomics LC-MS
Sensitive models of climate change impacts would require a better integration of multi-omics approaches that connect the abundance and activity of microbial populations. Here, we show that climate is a fundamental driver of the protein abundance of microbial populations (metaproteomics), yet not the...
ORGANISM(S): Escherichia coli 
2022-03-01 | PXD009773 | Pride
Shotgun Lc-ms Metaproteomics Climate change Soil 
ProteomicsWetland soil incubation treated with sulfate and oxygen
To unravel complex dynamics of environmental disturbance and microbial metabolic activities, we set up laboratory microcosms to investigate the effects of SO42- and O2 alone or in combination on microbial activities and interactions, as well as the resulting fate of carbon within wetland soil. We us...
ORGANISM(S): soil metagenome 
2024-05-19 | PXD047453 | Pride
Soil microbiome Lc-ms/ms 
ProteomicsSoil Metaproteomics - The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
The availability of organic carbon represents a major bottleneck for the development of soil microbial communities and the regulation of microbially-mediated ecosystem processes. However, there is still a lack of knowledge on how the lifestyle and population abundances are physiologically regulated ...
ORGANISM(S): soil bacterium 10G-05 
2017-07-07 | PXD003572 | Pride
Soil Metaproteomics Dryland 
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