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ProteomicsMicrobial functionality as affected by experimental warming of a temperate mountain forest soil - a metaproteomics survey
Soils are a huge reservoir of organic C, and the efflux of CO2 from soils is one of the largest fluxes in the global C cycle. Out of all natural environments, soils probably contain the greatest microbial biomass and diversity, which classifies them as one of the most challenging habitats for microb...
ORGANISM(S): uncultured soil microorganism 
2022-03-14 | PXD004428 | Pride
Soil microbial diversity Microbial community functionality Soil warming 
MetabolomicsCell type-specific proteomics uncovers a RAF15-SnRK2.6/OST1 kinase cascade in guard cells

Multicellular organisms such as plants contain various cell types with specialized functions. Analyzing the characteristics of each cell type reveals specific cell functions and enhances our understanding of organization and function at the organismal level. Guard cells (GCs) are specialized epid...

2024-09-03 | MTBLS3997 | MetaboLights
ProteomicsParallel protein extraction methods increase the diversity of protein identification in Park Grass Experiment soil
We have combined a modified protein extraction method, heat/thaw/phenol/chloroform (HTPC), with the established Surfactant extraction method to identify proteins from Park Grass Experiment (PGE) soil, which has an extensively sequenced microbial database.
ORGANISM(S): uncultivated soil bacterium 
2022-09-20 | PXD017392 | Pride
Lc-ms/ms Soil Enviromental proteome 
MetabolomicsPlant species richness elicits changes in the metabolome of grassland species via soil biotic legacy
Species-rich plant communities can induce unique soil biotic legacy effects through changing the abundance and composition of soil biota. These soil legacy effects can cause feedbacks to influence plant performance. In addition, soil biota can induce (defensive) secondary metabolites in shoots ...
2019-05-30 | MTBLS544 | MetaboLights
ProteomicsSoil Metaproteome - proteome data analysis
Phosphorus (P) limitation will play a key role in the productivity of agriculture in the coming decades. Struvite is an ammonium magnesium phosphate mineral that can be recovered from wastewater-treatment plants and can be considered as an alternative source of P. However, the impact of struvite on ...
ORGANISM(S): Escherichia coli 
2019-03-13 | PXD009595 | Pride
Lc-ms Agriculture Soil microbiome 
ProteomicsProteome data on soil microbial community
Soil microbial community is a complex blackbox that requires a multi-conceptual approach (Hultman et al., 2015; Bastida et al., 2016). Most methods focus on evaluating total microbial community and fail to determine its active fraction (Blagodatskaya & Kuzyakov 2013). This issue has ecological conse...
ORGANISM(S): Escherichia coli 
2021-02-02 | PXD005447 | Pride
Metaproteomics Soil Microbial community 
ProteomicsMediterranean grassland soil C-N compound turnover is mediated by genomically novel organisms, depth stratified, and rainfall dependent
integrated soil metagenomics and metaproteomics to study grassland soil microbial communities
ORGANISM(S): soil bacterium TS1114R 
2019-03-27 | PXD013110 | Pride
C-n compound Microbial communities Soil Metaproteomics 
ProteomicsStrategies for the interpretation of soil metaproteomic data
Evaluation of different strategies to interpret metaproteomics data acquired on soil samples from a floodplain along the Seine River (France) incorporating sample-specific metagenomics data, soil genome catalogue database, and generic sequence database.
ORGANISM(S): Eukaryota (eucaryotes) Bacteria Archaea Viruses 
2022-02-17 | PXD026798 | Pride
Metaproteomics Mags Metagenomics Soil Bioinformatics Sediment 
ProteomicsSoil metaproteome and pH effects
Soil microorganisms act as gatekeepers for soil-atmosphere carbon exchange by balancing the accumulation and release of soil organic matter. However, poor understanding of the mechanisms responsible hinders the development of effective land management strategies to enhance soil carbon storage. Here ...
ORGANISM(S): Escherichia coli 
2018-07-26 | PXD010526 | Pride
Soil metaproteome Ph effects Land use Lc-ms/ms 
ProteomicsSoil metaproteomics using DNA RNA protein co-extraction method
Soil is an inherently complex matrix and as such, we believe when performing culture-independent microbial community analyses using the 'omics' suite of tools, all biomolecules investigated should be co-extracted from the same biological sample. To this end, we developed a robust, cost-effective DNA...
ORGANISM(S): environmental samples 
2019-07-15 | PXD007077 | Pride
Soil metaproteomics lc ms/ms 
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