Solid-state culture

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Organisms

Homo sapiens (11)
food fermentation metagenome (4)
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unidentified (1)
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pride (91)
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CHEBI ID

CHEBI:30769 (2)
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CHEBI:133747 (1)
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CHEBI:140999 (1)
CHEBI:9082|CHEBI:15721 (1)
CHEBI:21008|CHEBI:78737|CHEBI:78697 (1)
CHEBI:24344|CHEBI:17050 (1)
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CHEBI:15682 (1)
CHEBI:32398 (1)
CHEBI:132244 (1)
CHEBI:15351 (1)
CHEBI:74823 (1)
CHEBI:132991 (1)

Metabolite Name

Alanylalanine (2)
L-Cystathionine (2)
Uracil (2)
Maltotriose (2)
L-Isoleucine (2)
Uridine (2)
L-Glutamic acid (2)
Peonidin 3-O-glucoside (1)
Petunidin 3-O-glucoside (1)
Asparaginylglutamate (1)
Β-D-Glucosamine (1)
Γ-Glutamylserine (1)
Hydroxyprolylcysteine (1)
Γ-Glutamylglycine (1)
Γ-Aminobutyryl-lysine (1)
2′-Deoxyguanosine 5′-monophosphate (1)
L-Histamine (1)
2′-O-Methyl-5-methyluridine (1)
5-Hydroxycytosine (1)
Dihydrolanosterol (1)
(+-)-alpha-Tocopherol (1)
Beta-Sophorose (1)
Turanose 2 (1)
Mycose (1)
Arachidiic acid (1)
2-(5-Hydroxy-1h-indol-3-yl)acetic acid (1)
N-a-Acetyl-L-Lysine (1)
P-octopamine (1)
(+)-pantothete (1)
N-carbamoyl-l-aspartic acid (1)

First Public Date

2025 (6)
2020 (4)
2014 (4)
2013 (3)
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2024 (2)
2019 (2)
2016 (2)
2023 (1)
2022 (1)
2018 (1)
2015 (1)

Classification

fungi (5)
bacteria (1)

Study status

Completed (1)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA (4)
ChIP-seq (2)
Human - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)
Observational (1)

Release Date

2025 (47)
2019 (32)
2024 (31)
2022 (27)
2023 (25)
2021 (24)
2020 (15)
2018 (15)
2014 (14)
2016 (12)
2015 (11)
2012 (9)
2013 (7)
2017 (7)
2010 (4)
2007 (4)
2026 (4)
2011 (3)
2008 (3)
2006 (3)
2002 (2)
2009 (1)
2000 (1)
1999 (1)

Lab affiliation

University of Warwick (8)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (3)
Department of Biochemistry and Molecular Biology & The Center for Systems Biology University of Iceland Sturlugata 8, 101 Reykjavik Iceland. (2)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (2)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf Germany (2)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (2)
Systematic Proteome Research & Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-Universität zu Kiel, Kiel, Germany (2)
-Centre of Microbial and Plant Genetics; KU Leuven; Leuven, 3000; Belgium -Center for Microbiology; VIB-KU Leuven; Leuven, 3000; Belgium (1)
1 Centre of Microbial and Plant Genetics; KU Leuven; Leuven, 3000; Belgium 2 Center for Microbiology; VIB-KU Leuven; Leuven, 3000; Belgium (1)
1. Harvard T.H. Chan School of Public Health, Boston, MA 02115 (1)
A.N. Bach Institute of Biochemistry, Federal Research Centre ‘Fundamentals of Biotechnology’ of the Russian Academy of Sciences, Leninsky pr., 33, 119071, Moscow, Russia (1)
Associate Professor APAF Director Australian Proteome Analysis Facility (APAF) Dept. Chemistry and Biomolecular Sciences E8C310, Research Park Drive Macquarie University Sydney NSW 2109 Australia Secretary, Australasian Proteomics Society (1)
Australian Institute of Tropical Health and Medicine, James Cook University, Cairns, Australia (1)
Australian Institute of Tropical Health and Medicine. Centre for Molecular Therapeutics. James Cook Univerisity, Cairns. (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Sciences Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
Bruce Lab, Genome Sciences, University of Washington (1)
Cancer Program, Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC, 3800, Australia (1)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (1)
Center for Neuroscience and Cell Biology (1)
Center for neuroscience and cell biology (1)
Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology, Karolinska Institutet, Science for Life Laboratory, Tomtebodavägen 23A, 171 65 Solna, Sweden (1)
Clinical Proteomics Mass Spectrometry, Science for Life Laboratory, Dept. of Oncology Pathology, Karolinska Institutet (1)
College of Life Science and Technology, Central South University of Forestry and Technology, Changsha, Hunan, China. (1)
Department of Biochemistry, University of Wisconsin - Madison (1)
Department of Biology, Technische Universität Darmstadt, 64287 Darmstadt, Germany Institute of Pharmaceutical Chemistry, Goethe Universität Frankfurt, 60438 Frankfurt/M., Germany (1)
Department of Biomolecular Chemistry and Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA. Morgridge Institute for Research, Madison, WI (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)

Location

United States (1)

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Label-free quantitative proteomic analysis of Peniophora incarnata T-7 during lignocellulose degradation under different substrate conditions

Peniophora incarnata T-7 is a white-rot fungus with a strong capability for lignocellulose degradation, particularly lignin-rich substrates. To investigate protein-level responses during lignocellulose degradation, P. incarnata T-7 was cultured on four solid-state conditions, including poplar wood (...

ORGANISM(S): Fungi Peniophora incarnata

2026-07-01 | PXD080412 | Pride

food fermentation metagenome

solid-state acetic acid fermentation culture Metagenome sequencing

PRJNA298105 | ENA

Transcriptome of Aspergillus oryzae following ER stress

The Aspergillus oryzae, an important filamentous fungus used in food fermentation and enzyme industry, has been revealed to own prominent features in its genomic compositions by genome sequencing and various other tools. However, the functional complexity of the A. oryzae transcriptome has not yet b...

ORGANISM(S): Aspergillus oryzae

2010-02-02 | E-GEOD-18851 | biostudies-arrayexpress

food fermentation metagenome

traditional Chinese solid-state acetic acid fermentation culture Metagenome sequencing

PRJNA298112 | ENA

Effect of Fe nanoparticle on growth and glycolipid biosurfactant production under solid state culture by marine Nocardiopsis sp. MSA13A.

Not available

S-EPMC4229807 | biostudies-literature

Exploring ultraviolet and nitrous acid-induced mutagenesis of Rhizopus oligosporus for extracellular inulinase production under solid-state culture.

Not available

S-EPMC11885772 | biostudies-literature

Global transcriptional responses in Lactobacillus casei Zhang under Solid-state and Liquid-state Fermentations