Soma K K - OmicsDI

OmicsDI

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Unknown (566)
Transcriptomics (25)
Proteomics (20)
Genomics (9)
Models (2)
Multiomics (1)

Organisms

Andropogon gerardi (16)
Bacteria (16)
Canis lupus familiaris (16)
Clostridium perfringens (16)
Cnidaria (16)
Cricetulus griseus (16)
Eukaryota (16)
Fasciola (16)
Hepatitis B virus (16)
Human betaherpesvirus 5 (16)
Madurella mycetomatis (16)
Mesocricetus auratus (16)
Miscanthus x giganteus (16)
Mus musculus (16)
Mycobacterium tuberculosis (16)
Orthoflavivirus (16)
Panicum virgatum (16)
Platyhelminthes (16)
Pseudomonas aeruginosa AES-1R (16)
Rattus norvegicus (16)
Saccharomyces cerevisiae (16)
Drosophila melanogaster (9)
Homo sapiens (7)
Mus musculus (6)
Caenorhabditis elegans (5)
Arabidopsis thaliana (3)
Rattus (2)
Tetrahymena thermophila (1)
Rattus norvegicus (1)
Danio rerio (1)

Organisms

Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (28)
pride (16)
ENA (3)
BioModels (2)
EGA (2)
geo (2)
jPOST (1)
MassIVE (1)
PanoramaPublic (1)

Tissue

Brain (4)
Whole body (3)
Neuron (2)
Blood plasma (1)
Cell culture (1)
Embryonic stem cell (1)
Epididymal white adipose tissue (1)
Fibroblast (1)
Germ cell (1)
Microglial cell line (1)
Motor neuron (1)
Plant cell (1)
Pluripotent stem cell (1)

Disease

Developmental and epileptic encephalopathy 1 (1)
Epilepsy (1)
Huntington Disease (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (9)
Bottom-up proteomics (4)
Data-dependent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (1)
SWATH MS (1)
SomaScan affinity proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)

Publication Date

2016 (5)
2011 (5)
2025 (5)
2024 (4)
2015 (4)
2018 (3)
2014 (3)
2013 (3)
2021 (3)
2026 (3)
2020 (2)
2012 (2)
2008 (2)
2022 (2)
2017 (1)
2010 (1)
2009 (1)
2023 (1)
2019 (1)

CHEBI ID

CHEBI:29108 (1)

IsPrivate

False (2)

First Public Date

2025 (1)
2021 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (12)
RNA-seq of non coding RNA (10)
ChIP-seq (3)
Other (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (69)
2023 (61)
2025 (60)
2021 (57)
2024 (46)
2018 (41)
2020 (37)
2017 (32)
2019 (31)
2015 (23)
2014 (20)
2016 (19)
2011 (14)
2012 (13)
2013 (12)
2010 (10)
2026 (10)
2008 (9)
2009 (6)
2007 (6)
2006 (5)
2001 (4)
2005 (3)
2004 (3)
2003 (2)
2000 (1)

Lab affiliation

CECAD, University of Cologne (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Chiara Guerrera, IRHC, HDR Head of the Necker Proteomics Faculty of Medecine, University Paris Cité SFR Necker INSERM US24 160 rue de Vaugirard | 75015 Paris Tél. 01 40 61 54 6 (1)
Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD) and Institute for Mitochondrial Diseases and Aging, Medical Faculty, University of Cologne, Cologne, Germany. (1)
Department of Chromosome Biology, Max F. Perutz Laboratories, University of Vienna, Vienna BioCenter, Austria (1)
Department of Internal Medicine, Gerontology and Geriatric Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157, United States (1)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (1)
Grad. Sch. Agr. Life Sci., Univ. Tokyo (1)
Institute for Genome Stability in Ageing and Disease, Medical Faculty, University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany Cologne Excellence Cluster for Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany (1)
Institute of Cell Biology, University of Bern, Bern, Switzerland (1)
MDC (1)
MPI for Brain Research, Proteomics, Frankfurt, Germany (1)
Non-coding RNAs and mechanisms of cytoplasmic gene regulation, Max Delbrück Center for Molecular Medicin, Berlin (1)
Proteome dynamics, Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (1)
Proteomics & Metabolomics Facility, University of Connecticut (1)
S. Robert Davis Chair of Medicine Professor and Chair, Department of Internal Medicine Director, Medical Scientist Training Program (1)