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TranscriptomicsTranscription profiling of mouse control embryos and pbx2-MO;pbx4-MO embryos at 10 somites and at 18 somites.
Pbx homeodomain proteins have been implicated in the regulation of gene expression during muscle development. Whether Pbx proteins are required broadly for the regulation of muscle gene expression or are required for the expression of a specific subset of muscle gene expression is not known. We em...
ORGANISM(S): Danio rerio 
2008-06-16 | E-GEOD-8428 | biostudies-arrayexpress
TranscriptomicsATAC-seq of mouse individual epithelial somites through development
Somites are transient embryonic structures consisting of hundreds of cells that bud off from the anterior tip of the presomitic mesoderm (PSM) on each side of the neural tube. They give rise to the vertebrae and associated skeletal muscles, nerves, and blood vessels. To characterise the transcriptio...
ORGANISM(S): Mus musculus 
2023-01-24 | E-MTAB-12539 | biostudies-arrayexpress
TranscriptomicsRNA-seq of mouse individual epithelial somites through development
Somites are transient embryonic structures consisting of hundreds of cells that bud off from the anterior tip of the presomitic mesoderm on each side of the neural tube. They give rise to the vertebrae and associated skeletal muscles, nerves, and blood vessels. To characterise the transcriptional ch...
ORGANISM(S): Mus musculus 
2023-03-31 | E-MTAB-12511 | biostudies-arrayexpress
ProteomicsProteomics of zebrafish early somites
The segmented pattern of the vertebral column and musculature in vertebrate embryos is established during somitogenesis. Here, using the model animal zebrafish, we employed Data-Independent Acquisition (DIA) to capture the proteomics change at the early stages of somite development.
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2025-10-13 | PXD058516 | Pride
Somites Zebrafish 
GenomicsMus musculus domesticus isolate:Somites
Mus musculus domesticus isolate:Somites Raw sequence reads
PRJNA339008 | ENA
TranscriptomicsMurine E9.5 embryo PSM and newly formed somites: Paraxis-/- vs WT
Transcriptional profiling of E9.5 mouse embryo tissue from the presomitic mesoderm (PSM) and somites I-IV. Tissue from embryos lacking a functional Paraxis gene (Paraxis-/-) was compared to identical tissue from E9.5 Wild Type embryos. The goal was to identify genes that had become deregulated in th...
ORGANISM(S): Mus musculus 
2013-12-05 | E-GEOD-47905 | biostudies-arrayexpress
GenomicsRNA-seq of mouse individual epithelial somites through development
RNA-seq of mouse individual epithelial somites through development
PRJEB58158 | ENA
GenomicsATAC-seq of mouse individual epithelial somites through development
ATAC-seq of mouse individual epithelial somites through development
PRJEB58828 | ENA
TranscriptomicsGene expression data from somites of E9.5 mouse embryos
We used microarrays to identify Pax3 targets during myogenesis in the mouse embryo Mouse embryos were genotyped Pax3GFP/+ or Pax3PAX3-FKHR/GFP and dissected at E9.5 under a fluorescent binocular. Somites were dissected from the interlimb region and the more hypaxial domain separated from the neural ...
ORGANISM(S): Mus musculus 
2010-12-01 | E-GEOD-22040 | biostudies-arrayexpress
UnknownSomites without a clock.
Not available
S-EPMC3992919 | biostudies-literature
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