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TranscriptomicsExpression analysis of Shigella flexneri 2a strain 301
Investigation of whole genome gene expression to identify overlooked sRNAs and sORFs. Background The completion of numerous genome sequences has introduced an era of whole-genome study. However, many real genes, including small RNAs (sRNAs) and small ORFs (sORFs), are missed in genome annotation. In...
ORGANISM(S): Shigella flexneri 2a str. 301 
2011-06-27 | E-GEOD-22800 | biostudies-arrayexpress
ProteomicsSmall Protein Enrichment-Based Proteogenomics Identifies Plentiful Missing Proteins and Three Novel sORFs in Saccharomyces cerevisiae
Small proteins (SPs) are defined as peptides of 100 amino acids or less encoded by short open reading frames (sORFs). Recent studies have shown that SPs are involved in many important biological processes, including cell signaling, metabolism, growth and so on. However, most of the annotated SPs in ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2018-06-15 | PXD008586 | Pride
Proteogenomics Short open reading frames Small proteins Enrichment Yeast Missing proteins 
GenomicsRibosome profiling of lncRNA-derived sORFs in radiosensitive and radioresistant HNSCCs
Ribosome profiling of lncRNA-derived sORFs in radiosensitive and radioresistant HNSCCs
PRJNA899874 | ENA
UnknownDrought stress differentially regulates the expression of small open reading frames (sORFs) in Arabidopsis roots and shoots.
Not available
S-EPMC5022413 | biostudies-literature
UnknownCombining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs.
Not available
S-EPMC3852105 | biostudies-literature
UnknownD-sORF: Accurate Ab Initio Classification of Experimentally Detected Small Open Reading Frames (sORFs) Associated with Translational Machinery.
Not available
S-EPMC11351124 | biostudies-literature
UnknownUltra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs.
Not available
S-EPMC5144680 | biostudies-literature
GenomicsUltra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryo reveals hundreds of conserved translating sORFs
Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryo reveals hundreds of conserved translating sORFs
PRJEB13069 | ENA
TranscriptomicsUltra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryo reveals hundreds of conserved translating sORFs
Identification of translating small open reading frames (sORFs) through deep sequecing of ribosome-associated poly-adenylated RNA and conservation analysis in early Drosophila embryo
ORGANISM(S): Drosophila melanogaster 
2017-03-05 | E-MTAB-4571 | biostudies-arrayexpress
UnknownsORFdb - a database for sORFs, small proteins, and small protein families in bacteria.
Not available
S-EPMC11796252 | biostudies-literature
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