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ProteomicsProximity labeling in Arabidopsis seedlings expressing R-degron-Turbo vs. M-degron-Turbo vs. L-degron-Turbo untreated (DMSO control), treated with 10µM Bortezomib and treated with 1µM Concanamycin A.
Goal was to identify N-recognins for Arginine and Leucine by comparison of biotinylated proteins from 1 week old whole Arabidopsis seedlings constitutively expressing the bait constructs R-degron-Turbo or L-degron-Turbo. M-degron-Turbo served as a negative control. The plants were treated with 50µM ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-04-15 | PXD041610 | Pride
Bortezomib N-degron pathway Proximity labeling Concanamycin a Protein turnover Turbo 
ProteomicsProteomics of tau repeat domain interactome via split TurboID proximity labeling in neuronal cells
In Alzheimer's disease (AD) and other tauopathies, tau dissociates from microtubules and forms toxic aggregates that contribute to neurodegeneration. Although some of the pathological interactions of tau have been identified from postmortem brain tissue, these studies are limited by their inability ...
ORGANISM(S): Homo sapiens (Human) 
2025-11-12 | PXD066874 | Pride
Sturbo Dia Affinity purification Dia-ms Proximity labeling Tau Split turbo 
UnknownSPRING-RIO TSE: 2D T2 -Weighted Turbo Spin-Echo brain imaging using SPiral RINGs with retraced in/out trajectories.
Not available
S-EPMC9232877 | biostudies-literature
TranscriptomicsAn integrated genomic and expression analysis of 7q deletion in splenic marginal zone lymphoma (Affymetrix HG-U133plus2 gene expression microarray)
Splenic marginal zone lymphoma (SMZL) is an indolent B-cell lymphoproliferative disorder characterised by 7q32 deletion, but the target genes of this deletion remain unknown. In order to elucidate the genetic target of this deletion, we performed an integrative analysis of the genetic, epigenetic, t...
ORGANISM(S): Homo sapiens 
2012-08-30 | E-GEOD-35426 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of wild type Neurospora crassa cells treated with novel antifungal agents
Purpose: Evaluate the transcriptional profile of Neurospora crassa cells treated with a group of novel antifungal compounds Methods: Conidial suspensions were obtained and 1 x 106 cells/ml incubated in minimal medium for 6 hours (26ºC, 140 rpm, constant light) followed by the addition of the indica...
ORGANISM(S): Neurospora crassa 
2015-11-25 | E-GEOD-53040 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of staurosporine-induced cell death in Vogel's minimal medium with different concentrations of calcium
Purpose: Compare the transcriptional profile of staurosporine-treated cells in Neurospora crassa wild type cells grown with different availabilities of calcium. Methods: Conidial suspensions were obtained and 1 x 106 cells/ml incubated in minimal medium (with the indicated concentrations of calcium)...
ORGANISM(S): Neurospora crassa 
2014-12-05 | E-GEOD-53013 | biostudies-arrayexpress
ProteomicsProximity labelling of mitochondria and endosomes upon mtDNA replication stress.
This project aims to identify novel regulators of mtDNA turnover, for what we used TurboID. For specific detection of the mitochondria-endosome proteome, we fused the N-terminal part of Turbo ID to RAB5C (TurboID aa1-aa72; RAB5C-SplitTurboNt-V5) and, the C-terminal part to SAMM50 (TurboID aa73–aa246...
ORGANISM(S): Homo sapiens (Human) 
2025-04-07 | PXD049081 | Pride
Mtdna Mitochondria Turboid 
TranscriptomicsSerial hepatic gene expression profiling in Angus steers during feed restriction and realimentation
Growing ruminants maintained under dietary restriction for extended periods will exhibit compensatory growth when reverted to ad libitum feeding. This period of compensatory growth is associated with increased feed efficiency, lower basal energy requirements, and changes in circulating concentration...
ORGANISM(S): Bos taurus 
2010-05-19 | E-GEOD-12853 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of staurosporine-induced cell death in wild type versus M-NM-^Tczt-1 in Neurospora crassa
Purpose: Compare the transcriptional profile of staurosporine-treated cells in Neurospora crassa wild type and M-NM-^Tczt-1 (M-NM-^TNCU09974) cells Methods: Conidial suspensions were obtained and 1 x 106 cells/ml incubated in minimal medium for 6 hours (26M-BM-:C, 140 rpm, constant light) followed b...
ORGANISM(S): Neurospora crassa 
2014-07-01 | E-GEOD-52153 | biostudies-arrayexpress
TranscriptomicsMicroarray of Genes affected by BlxR deletion
A mini-microarray containing spotted oligos corresponding to 289 B. melitensis genes was used to identify candidate genes whose transcription is influenced by BlxR. This microarray contains genes encoding the type IV secretion system, flagella, transcriptional regulators, transporters, and proteins...
ORGANISM(S): Brucella melitensis 
2008-04-30 | E-GEOD-10735 | biostudies-arrayexpress
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