Turbo - OmicsDI

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Transcriptomics (1121)
Unknown (420)
Proteomics (365)
Genomics (195)
Metabolomics (94)
Models (1)
Methylation profiling (1)
Other (1)

Organisms

Homo sapiens (234)
Mus musculus (222)
Arabidopsis thaliana (51)
Saccharomyces cerevisiae (43)
Rattus norvegicus (16)
Schizosaccharomyces pombe (15)
Mycobacterium tuberculosis (14)
Bacillus subtilis (13)
Candida albicans (13)
Escherichia coli (12)
Chlorocebus sabaeus (10)
Pseudomonas aeruginosa (9)
Nicotiana attenuata (8)
Streptococcus pyogenes (8)
Caenorhabditis elegans (8)
Pimephales promelas (7)
Streptomyces venezuelae (7)
Glycine max (7)
Oryza sativa Japonica Group (7)
Escherichia coli K-12 (7)
Drosophila melanogaster (7)
Bacillus cereus (6)
Enterococcus faecium (6)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (6)
Bos taurus (6)
Mycobacterium tuberculosis H37Rv (6)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (5)
Cucumis sativus (5)
Taeniopygia guttata (5)
Bacillus subtilis subsp. subtilis str. 168 (5)

Organisms

Homo sapiens (25)
Mus musculus (15)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (6)
Synechocystis sp. PCC 6803 (4)
Gambusia holbrooki (3)
Neurospora crassa (3)
Pseudomonas aeruginosa (3)
Saccharomyces cerevisiae (3)
Arabidopsis thaliana (3)
Turbo bruneus (2)
Plasmopara viticola (2)
Chlamydia trachomatis (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Danio rerio (2)
Roseovarius tolerans (1)
Casuarina glauca (1)
Burkholderia pseudomallei K96243 (1)
Peromyscus leucopus (1)
Batrachochytrium salamandrivorans (1)
Turbo sazae (1)
Cronobacter turicensis (1)
Turbo cornutus (1)
Lymnaea stagnalis (1)
Yersinia pseudotuberculosis (1)
Nicotiana benthamiana (1)
Pseudomonas aeruginosa PA14 (1)
Hordeum vulgare (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Xenopus laevis (1)
Mycobacterium tuberculosis (1)

Repository

biostudies-arrayexpress (1153)
pride (347)
ENA (145)
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geo (19)
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Tissue

Cell culture (89)
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Blood (7)
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Saliva (5)
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T cell (5)
HEK-293T cell (4)
Seed (4)
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Disease

Disease free (8)
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Acute leukemia (6)
Normal (4)
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Cardiovascular system disease (3)
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Human cytomegalovirus infection (2)
Hepatocellular carcinoma (2)
Non-small cell lung carcinoma (2)
Brain glioblastoma multiforme (2)
Cervix carcinoma (2)
Wounds and Injuries (2)
Mantle cell lymphoma (1)
High-grade dysplasia (1)
Psoroptes ovis infestation (1)
Acute promyelocytic leukemia (1)
Delirium (1)
Food allergy (1)
Tay-Sachs disease (1)
GM1 gangliosidosis (1)
Krabbe disease (1)
Neuronal ceroid lipofuscinosis 6 (1)
Thyroid cancer (1)
Abnormality of prenatal development or birth (1)
Inflammation (1)

Technology Type

Mass Spectrometry (347)
Shotgun proteomics (172)
Bottom-up proteomics (112)
Data-dependent acquisition (72)
Mass spectrometry (63)
Affinity purification coupled with mass spectrometry proteomics (45)
Mass spectrometry assay (30)
Top-down proteomics (19)
SWATH MS (12)
Data-independent acquisition (11)
Gel-based experiment (11)
Affinity proteomics (6)
SRM/MRM (5)
Proteogenomics (1)
Glycoproteomics (1)

Instrument Platform

NextSeq 500 (78)
Illumina HiSeq 2000 (64)
Illumina HiSeq 2500 (31)
Illumina NovaSeq 6000 (30)
NextSeq 550 (19)
Illumina HiSeq 4000 (19)
Illumina MiSeq (8)
Illumina Genome Analyzer IIx (7)
Ion Torrent Proton (7)
Illumina Genome Analyzer II (5)
Vortex (5)
Illumina NovaSeq X (5)
Illumina HiSeq 1500 (5)
NextSeq 2000 (4)
BGISEQ-500 (4)
Agilent G2505B scanner (3)
Anaerobic workstation with airlock (2)
Illumina HiSeq 3000 (2)
Molecular Biology laboratory (1)
Mammalian cell culture laboratory (1)
Bio-Rad Mini-PROTEAN electrophoresis system and wet transfer cassettes, (1)
Bio-Link Crosslinker BLX-E254 (1)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
Novogene NGS DNA Library Prep Set (Cat No.PT004) (1)
TruSeq Nano DNA Low Throughput library preparation Kit (Illumina, San Diego, USA, REF#20015964) (1)
PureGene DNA extraction Kit (Qiagen) (1)
PEG8000, NaCl, DNase, Benzonase, EDTA, SDS (1)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)

Publication Date

2014 (161)
2015 (156)
2013 (126)
2025 (122)
2024 (115)
2012 (115)
2026 (104)
2010 (94)
2016 (90)
2023 (81)
2011 (76)
2021 (70)
2022 (67)
2020 (56)
2019 (49)
2017 (41)
2018 (40)
2009 (30)
2008 (24)
2007 (6)
2005 (3)
2006 (2)
2004 (1)

CHEBI ID

CHEBI:16335 (13)
CHEBI:16704 (12)
CHEBI:15428 (12)
CHEBI:15741 (11)
CHEBI:17368 (11)
CHEBI:16708 (11)
CHEBI:17191 (10)
CHEBI:16610 (10)
CHEBI:17895 (10)
CHEBI:15891 (10)
CHEBI:18012 (10)
CHEBI:28364 (9)
CHEBI:17295 (9)
CHEBI:16414 (9)
CHEBI:15843 (9)
CHEBI:17015 (9)
CHEBI:15971 (9)
CHEBI:16015 (9)
CHEBI:16349 (9)
CHEBI:15611 (9)
CHEBI:17509 (9)
CHEBI:17568 (9)
CHEBI:16040 (9)
CHEBI:16761 (8)
CHEBI:17925 (1)
CHEBI:18283 (1)
CHEBI:16084 (1)
CHEBI:16905 (1)
CHEBI:17665 (1)
CHEBI:15422 (1)

Metabolite Name

Adenosine (16)
Inosine (15)
Hypoxanthine (14)
L-Cystine (13)
Uracil (13)
Adenine (13)
Guanine (13)
L-Alanine (13)
L-Leucine (13)
N-Acetyl-L-Tyrosine (11)
Spermidine (11)
L-Isoleucine (11)
Guanosine (11)
Urea (10)
Glycocholic acid (10)
Ala-Phe (10)
Cytosine (10)
Creatine (10)
L-Phenylalanine (10)
L-Serine (10)
3,3',5-Triiodo-L-Thyronine (9)
Carnitine C2:0 (9)
L-Norleucine (9)
Tryptamine (9)
Kynurenine (9)
3-Guanidinopropionic acid (9)
L-Tyrosine (9)
Tyrosine (9)
N-Acetylputrescine (9)
Histamine (9)

First Public Date

2014 (27)
2024 (22)
2026 (18)
2025 (15)
2022 (13)
2019 (11)
2021 (8)
2020 (6)
2017 (5)
2023 (4)
2018 (4)
2016 (4)
2015 (4)
2013 (3)
2011 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Functional Proteomics, ICR (8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (6)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (6)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA (5)
Cambridge Institute for Medical Research, University of Cambridge (5)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (3)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt; Frankfurt, Germany. (3)
Institute for Molecular Biosciences, The University of Queensland (3)
University of Copenhagen Department of Biomedical Sciences Blegdamsvej 3B København N, DK-2200 (2)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
CGSI - University of Wisconsin Madison. Sussman lab. (2)
Goethe-Universität Frankfurt, Georg-Speyer-Haus, Paul-Ehrlich-Str. 42-44, Frankfurt am Main, GERMANY (2)
Professor of Pharmacology, Duke University (2)
Department of Genetics, Stanford University (2)
Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, Edinburgh EH4 2XU, UK (2)
Institute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany Structural Genomics Consortium (SGC), Buchmann Institute for Life Sciences, Max-von-Laue-Str. 15, 60438 Frankfurt am Main, Germany German Cancer Consortium (DKTK) Mainz/Frankfurt, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany (2)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (2)
Institute of Molecular Systems Medicine, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany. The Center for Functional Proteomics, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany. Frankfurt Cancer Institute, Frankfurt am Main, Germany. Cardio-Pulmonary Institute, Frankfurt am Main, Germany. (2)
Carnegie Mass Spec Facility (2)
University of Calgary (2)
Imperial College London (2)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (2)
Group Leader Cell&Developmental Biology John Innes Centre Norwich, UK (2)
University of Edinburgh (2)
John Innes Centre Dept. Molecular Microbiology Head of Department Norwich UK (1)
1Center for Medical Genetics, Ghent University Hospital, Ghent, 9000, Belgium 2Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent (1)
NHMRC Principal Research Fellow Editor-in-Chief, Toxicon & Toxicon:X Theme Leader, Australian Research Council Centre of Excellence for Innovations in Peptide & Protein Science Deputy Head, Division of Chemistry & Structural Biology Institute for Molecular Bioscience The University of Queensland (1)
1. Department of Paediatrics, University Hospital of North Norway, Tromsø, Norway 2 Paediatric Research Group, Department of Clinical Medicine, Faculty of Health Sciences, UiT- The Arctic University of Norway, Tromsø, Norway. (1)
Boehringer Ingelheim Pharma GmbH & Co. KG, Drug Discovery Sciences (1)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (1)

IsPrivate

False (1)

Classification

bacteria (24)

Modification

57.021464 (1)
15.977156 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (511)
RNA-seq of coding RNA (384)
ChIP-seq (30)
Other (26)
RNA-seq of total RNA (25)
Transcription profiling by RT-PCR (22)
Methylation profiling by high throughput sequencing (18)
RNA-seq of non coding RNA (15)
High-throughput sequencing (14)
Ribo-seq (14)
ChIP-chip by tiling array (13)
ChIP-chip by array (10)
CLIP-seq (10)
Transcription profiling by tiling array (9)
RIP-seq (9)
Cell line - High-throughput sequencing (7)
MicroRNA profiling by array (7)
One-color microarray (4)
Human - High-throughput sequencing (3)
Translation profiling (3)
Animal - High-throughput sequencing (3)
Genotyping by array (2)
Bisulfite-seq (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Human - Two-color microarray (1)
Animal - One-color microarray (1)
Plant - High-throughput sequencing (1)
RNAi profiling by array (1)

Release Date

2015 (165)
2014 (164)
2013 (124)
2025 (117)
2012 (115)
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2010 (96)
2016 (95)
2011 (75)
2021 (74)
2022 (69)
2023 (65)
2019 (57)
2018 (52)
2020 (51)
2017 (45)
2009 (32)
2026 (30)
2008 (25)
2007 (5)
2005 (3)
2006 (2)
2004 (1)
2000 (1)

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Turbo cornutus

Turbo cornutus Genome sequencing

PRJNA1436127 | ENA

Turbo sazae

RNA-seq of the digestive gland from the turban snail Turbo sazae

PRJDB37613 | ENA

Turbo bruneus

Turbo bruneus overview

PRJNA197228 | ENA

Turbo bruneus

Turbo bruneus Random survey

PRJNA196980 | ENA

Engineered allostery in a light-regulated version of TurboID for precise spatiotemporal control of proximity labeling in living cells

Lee SY, Chea JS, Zhao BX, Xu C, Udeshi ND, Roh H, Kim C, Cho K, Carr SA, Ting A. 2022 The incorporation of light-responsive domains into engineered proteins has produced optogenetic tools with the ability to regulate protein localization, interactions, and function with light. We introduced this mod...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-11-09 | MSV000090683 | MassIVE

Proximity labeling in Arabidopsis seedlings expressing R-degron-Turbo vs. M-degron-Turbo vs. L-degron-Turbo untreated (DMSO control), treated with 10µM Bortezomib and treated with 1µM Concanamycin A.

Goal was to identify N-recognins for Arginine and Leucine by comparison of biotinylated proteins from 1 week old whole Arabidopsis seedlings constitutively expressing the bait constructs R-degron-Turbo or L-degron-Turbo. M-degron-Turbo served as a negative control. The plants were treated with 50µM ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2024-04-15 | PXD041610 | Pride

GPT-3.5 Turbo and GPT-4 Turbo in Title and Abstract Screening for Systematic Reviews.

Not available

S-EPMC11922487 | biostudies-literature

LAMP1 and LAMP2 proximity labelling

The aim of the study is to capture the endogenous protein interactomes of LAMP1 and LAMP2A in human neurons using proximity labelling. This was carried out using full-length LAMP1 or LAMP2A fused to the light-activated biotin ligase LOV-Turbo, in cortical neurons differentiated from human iPSCs (I3...

ORGANISM(S): Homo sapiens (Human)

2026-01-21 | PXD067562 | Pride

Lov-turbo Lamp1 Turboid Lamp2a

Amino Turbo Chirality and Its Asymmetric Control.

Not available

S-EPMC11411161 | biostudies-literature

The complete mitochondrion of Turbo cornutus

PRJNA755449 | ENA

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