Stadler Marc M - OmicsDI

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Genomics (7)
Metabolomics (1)
Proteomics (1)

Organisms

Homo sapiens (7)
Schizosaccharomyces pombe 927 (1)

Repository

EGA (7)
MetaboLights (1)
pride (1)

Technology Type

Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Mass spectrometry (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Mass Spectrometry (1)

Instrument Platform

Exactive (Thermo Scientific) (1)

Publication Date

2016 (1)
2024 (1)

Metabolite Name

(+/-)-2-Hydroxy-4-(methylthio)butanoic acid (1)
(+/-)-3-Hydroxynonanoic acid (1)
(+/-)-Tryptophan (1)
(11Z,14Z)-3-Icosa-11,14-dienoylcarnitine (1)
(12E)-9-Hydroxyoctadecenoylcarnitine (1)
(1R,2R,4R,5S)-(+)-p-Menthane-2,5-diol (1)
(2-oxo-2,3-dihydro-1h-indol-3-yl)acetic acid (1)
(2R,3S)-2,3-dimethylmalate (1)
(2R,3S)-2-Octyl-3-pentyloxane (1)
(2S)-2-Hydroxyhexadecanoylcarnitine (1)
(2S)-2-[[(2R,3S,4R,5R)-5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methylamino]-4-sulfanylbutanoic acid (1)
(4,6-Dimethylpyrimidin-5-yl)-[4-[4-[2-[2-methoxy-4-(trifluoromethyl)phenyl]ethyl]-3-methylpiperazin-1-yl]-4-methylpiperidin-1-yl]methanone (1)
(5E)-7-{4,6-Dihydroxy-2-[(1E,5E)-3-hydroxyocta-1,5-dien-1-yl]oxan-3-yl}hept-5-enoylcarnitine (1)
(8Z)-10-Hydroxyhexadecenoylcarnitine (1)
(S)-a-Amino-2,5-dihydro-5-oxo-4-isoxazolepropanoic acid N2-glucoside (1)
(r)-2-hydroxystearic acid (1)
1,3,5-Triazin-2(1H)-one, 4-amino-1-(2-deoxy-beta-D-erythro-pentofuranosyl)- (1)
1,3-Propanediol, 2,2-diethyl-, dicarbamate (1)
1,7-dimethyluric acid (1)
1-(11Z,14Z-eicosadienoyl)-glycero-3-phosphate (1)
1-Heneicosanoyl-glycero-3-phosphoserine (1)
1-Methoxy-4-(2-propenyl)benzene (1)
1-O-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-[3,4-Dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxyhydropyridin-2-one (1)
10-Hydroxy-3-methoxy-1,3,5,7-cadinatetraen-9-one (1)
12-hydroxydodecanoic acid (1)
13,14-dihydro-15-keto-tetranor pgf1beta (1)
13-Hode (1)
13-methylnonadecanoylcarnitine (1)
16-hydroxyhexadecanoic acid (1)

Lab affiliation

Genome Regulation, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (1)

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Improving global feature detectabilities through scan range splitting for untargeted metabolomics by high-performance liquid chromatography-Orbitrap mass spectrometry

Untargeted metabolomics aims at obtaining quantitative information on the highest possible number of low-molecular biomolecules present in a biological sample. Rather small changes in mass spectrometric spectrum acquisition parameters may have a significant influence on the detectabilities of metabo...

2016-06-09 | MTBLS233 | MetaboLights

Large-scale interactome screen for predicted transcription factors in fission yeast using IP-MS.

Large-scale interactome screen for 89 transcription factors (TFs) in fission yeast. TFs are tagged at the endogenous locus with a 3xFLAG affinity epitope. Cells cultured under optimal conditions (30°C, rich medium) were subjected to IP-MS at 150 mM an 500 mM NaCl.

ORGANISM(S): Schizosaccharomyces pombe 927

2024-08-30 | PXD054070 | Pride

ena-DATASET-DKFZ-IBIOS-17-08-2015-09:13:01:216-19 - samples

PAR-CLIP was performed on the Argonaute-2 protein (AGO2) in four lymphoma cell lines: Namalwa Raji SU-DHL-4 SU-DHL-6

EGAD00001001468 | EGA

ena-DATASET-DKFZ-IBIOS-16-11-2015-13:05:39:993-4 - samples

Part of WGS seq data of Maligant Lymphoma study (ICGC)

EGAD00001001673 | EGA

ena-DATASET-DKFZ-IBIOS-16-09-2015-13:05:30:578-414 - samples

After overexpression and knockdown of both described novel miRs nmiR-1 and nmiR-2 in BL cell lines (SU-DHL4 for nmiR-1 and Raji for nmiR-2), we performed regular RNA-Seq (including Mock controls for all cell lines) to identify their direct and indirect downstream mRNA targets.

EGAD00001001612 | EGA

ena-DATASET-DKFZ-IBIOS-06-10-2015-14:15:14:065-198 - samples

miRNA seq data of 13 cases (MMML)

EGAD00001001632 | EGA

ena-DATASET-DKFZ-IBIOS-16-11-2015-12:46:40:494-3 - samples

Part of RNA sequencing data of Malignant Lymphoma Study (ICGC)

EGAD00001001672 | EGA

ena-DATASET-DKFZ-IBIOS-23-09-2015-12:28:32:695-418 - samples

miRNA seq data of 43 cases out of dataset EGAD00001000650 (MMML)

EGAD00001001619 | EGA

Genome-wide identification of distinct miRNA-mRNA target regulation pairs in Non-Hodgkin lymphomas: a report from the ICGC MMML-Seq consortium

We obtained miRNA profiles by miRnome sequencing from ICGC MMML-Seq patients diagnosed with Burkitt lymphoma, diffuse large B-cell lymphoma and follicular lymphoma and provide evidence of subtype-specific miRNA expression differences. We describe differentially expressed, mutated, edited and not pre...

EGAS00001001394 | EGA

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