Streptavidin - OmicsDI

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Transcriptomics (2944)
Proteomics (2156)
Unknown (1417)
Genomics (726)
Other (18)
Methylation profiling (1)
Metabolomics (1)

Organisms

Homo sapiens (1435)
Mus musculus (1069)
Rattus norvegicus (143)
Thermus thermophilus HB8 (71)
Drosophila melanogaster (61)
Arabidopsis thaliana (61)
Saccharomyces cerevisiae (50)
Sus scrofa (26)
Bos taurus (25)
Caenorhabditis elegans (24)
Danio rerio (23)
Macaca mulatta (19)
Candida albicans (10)
Escherichia coli (10)
Canis lupus familiaris (9)
Schizosaccharomyces pombe (7)
Xenopus laevis (7)
Macaca fascicularis (6)
Vitis vinifera (6)
Pseudomonas aeruginosa (6)
Gossypium hirsutum (5)
Callithrix jacchus (5)
Haemophilus influenzae (5)
Oryza sativa (5)
Oncorhynchus mykiss (5)
Pseudomonas aeruginosa PAO1 (5)
Glycine max (5)
Triticum aestivum (5)
Gallus gallus (5)
Escherichia coli str. K-12 substr. MG1655 (4)

Organisms

Homo sapiens (209)
Mus musculus (180)
Rattus norvegicus (18)
Saccharomyces cerevisiae (16)
Drosophila melanogaster (6)
Thermus thermophilus HB8 (5)
Arabidopsis thaliana (5)
Xenopus laevis (4)
Danio rerio (4)
synthetic construct (4)
Macaca fascicularis (3)
Escherichia coli (3)
Mus musculus x Mus spretus (2)
Karenia brevis (2)
Neurospora crassa (2)
Tetrahymena thermophila (2)
Hordeum vulgare subsp. vulgare (2)
Sus scrofa (2)
Plasmodium falciparum (2)
Gallus gallus (2)
Gaussia princeps (in: crustaceans) (1)
Trypanosoma brucei brucei (1)
Panicum miliaceum (1)
Caulobacter vibrioides NA1000 (1)
Semliki Forest virus (1)
Corynebacterium glutamicum (1)
Callithrix jacchus (1)
Arabidopsis halleri subsp. gemmifera (1)
Schizosaccharomyces pombe (1)
Macaca mulatta (1)

Repository

biostudies-arrayexpress (3064)
pride (1937)
ENA (540)
geo (121)
MassIVE (83)
iProX (62)
jPOST (26)
NODE (14)
EGA (5)
GPMDB (1)
MetaboLights (1)

Tissue

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Splenic B cells (1)

Disease

Breast cancer (52)
Colon cancer (28)
Normal (18)
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Amyotrophic lateral sclerosis (6)
Chronic lymphocytic leukemia (5)
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Carcinoma (3)
B-cell chronic lymphocytic leukemia (2)
ACUTE MYELOID LEUKEMIA (2)
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Acute Myeloid Leukemia (2)
Breast carcinoma (2)
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Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Toxicity (1)
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Lymphoblastic leukemia (1)
MAS (1)
LPS-induced acute lung injury (1)
Diabetes mellitus type 1 (1)
Breast Normal (1)
Intestinal type gastric cancer (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
CHRONIC LYMPHOCYTIC LEUKEMIA (1)
NORMAL (1)
Nonfunctioning endocrine tumors (1)
Breast Carcinoma (1)

Technology Type

Mass Spectrometry (1937)
Affinity purification coupled with mass spectrometry proteomics (759)
Shotgun proteomics (663)
Bottom-up proteomics (459)
Data-dependent acquisition (295)
Gel-based experiment (115)
Data-independent acquisition (83)
Top-down proteomics (44)
Affinity proteomics (38)
Chemical cross-linking coupled with mass spectrometry proteomics (27)
SWATH MS (25)
SRM/MRM (14)
DiaPASEF (13)
Proteogenomics (6)
SomaScan affinity proteomics (5)
RNA mass spectrometry (4)
Immunopeptidomics (4)
MSE (4)
All-ion fragmentation (4)
HDMSE (3)
Mass spectrometry (1)
Metaproteomics (1)

Instrument Platform

NextSeq 500 (65)
Illumina HiSeq 2500 (34)
Illumina NovaSeq 6000 (33)
Illumina HiSeq 2000 (25)
Illumina HiSeq 4000 (21)
Scanning hardware (14)
NextSeq 2000 (11)
Illumina MiSeq (8)
ScanArray 4000XL [PerkinElmer] (6)
Illumina NovaSeq X (5)
Agilent High resolution C scanner (4)
418 [Affymetrix] (4)
Illumina HiSeq 1000 (4)
NextSeq 550 (4)
PromethION (3)
MinION (3)
HiSeq X Ten (3)
Illumina HiSeq 3000 (3)
Sequel II (2)
Axon GenePix 4000B scanner (2)
Beadarray reader (2)
Illumina BeadArray reader (2)
Affymetrix GeneChip(R) HT Scanner (2)
GeneChip Scanner 3000 [Affymetrix] (2)
GenePix 4000A [Axon Instruments] (2)
Illumina Genome Analyzer IIx (2)
G2565BA DNA microarray scanner [Agilent] (2)
Illumina Genome Analyzer II (2)
NA (2)
Whole Transcriptome v2 kit (1)

Publication Date

2010 (462)
2025 (412)
2014 (411)
2013 (401)
2012 (359)
2026 (353)
2011 (347)
2024 (330)
2015 (320)
2023 (296)
2022 (294)
2021 (223)
2016 (165)
2018 (145)
2020 (141)
2019 (139)
2008 (117)
2009 (114)
2017 (93)
2007 (80)
2005 (27)
2006 (16)
2004 (14)

CHEBI ID

CHEBI:60281 (1)
CHEBI:19688 (1)
CHEBI:19229 (1)
CHEBI:19228 (1)
CHEBI:20794 (1)
CHEBI:19702 (1)
CHEBI:19062 (1)
CHEBI:20607 (1)
CHEBI:17802 (1)
CHEBI:21891 (1)
CHEBI:16235 (1)
CHEBI:45996 (1)

Metabolite Name

N(6),N(6)-dimethyladenine (1)
N(2)-methylguanosine (1)
Ribothymidine (1)
7-methylguanosine (1)
2-methyladenosine (1)
5-methylcytidine (1)
2'-O-methylguanosine (1)
2'-O-methylcytidine (1)
Pseudouridine (1)
Guanine (1)
N(6)-methyladenosine (1)
1-methylguanosine (1)

First Public Date

2014 (166)
2024 (48)
2025 (41)
2020 (36)
2023 (31)
2022 (29)
2021 (28)
2019 (28)
2026 (24)
2018 (24)
2013 (24)
2017 (21)
2016 (20)
2015 (20)

Classification

bacteria (7)
protozoa (4)
viruses (1)

Modification

42.010565 (4)
15.994915 (4)
-17.026549 (3)
Not available (3)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
N6-dimethyl-L-lysine (2)
788.725776 (1)
47.984744 (1)
3-dipalmitoyl-glycerol)cysteine (1)
0.984016 (1)
6-dioxaoctanediamine derivatized cysteine (1)
N6 (1)
57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (2254)
RNA-seq of coding RNA (195)
ChIP-seq (97)
Other (91)
MicroRNA profiling by array (57)
Proteomic profiling by array (44)
Comparative genomic hybridization by array (35)
RNA-seq of coding RNA from single cells (26)
Methylation profiling by high throughput sequencing (26)
Transcription profiling by tiling array (24)
DNA-seq (23)
ChIP-chip by tiling array (22)
Hi-C (21)
Unknown experiment type (19)
RNA-seq of total RNA (19)
Genotyping by array (12)
Methylation profiling by array (10)
Animal - One-color microarray (9)
Cell line - High-throughput sequencing (7)
ChIP-chip by array (7)
RNA-seq of non coding RNA (7)
Human - One-color microarray (6)
GRO-seq (5)
ATAC-seq (4)
CUT&RUN (4)
Transcription profiling by SAGE (3)
CLIP-seq (3)
Bisulfite-seq (3)
MNase-seq (2)
Cell line - One-color microarray (2)

Release Date

2010 (509)
2013 (454)
2014 (448)
2012 (403)
2011 (381)
2015 (364)
2016 (221)
2022 (176)
2018 (158)
2023 (149)
2008 (149)
2009 (143)
2021 (138)
2020 (131)
2017 (116)
2024 (108)
2019 (108)
2025 (100)
2007 (95)
2026 (37)
2005 (33)
2006 (23)
2004 (18)
2003 (7)
2002 (6)
1998 (3)
2001 (1)
2000 (1)
1999 (1)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (21)
NCI/NIH CSB (10)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (7)
VIB-UGent Center for Medical Biotechnology (7)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (7)
Boston College (6)
Chemistry Department, Boston College, USA (6)
Imperial College London (6)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China (6)
EDyP (6)
University of Edinburgh (6)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (5)
Department of Chemistry, Scripps Research (5)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (5)
Carnegie Mass Spec Facility (5)
University of York (5)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (5)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (5)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
Vividion Therapeutics (4)
Cleveland Clinic Lerner Research Institute Cardiovascular and Metabolic Sciences (4)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (4)
Sun Yat-sen University (4)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (4)
Molecular Genetics, RPTU Kaiserslautern, Germany (4)
Zhejiang University, China (4)
Peking University (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Molecular Leukemogenesis Group, German Cancer Research Center, Heidelberg, Germany Heidelberg University, Medical Faculty, Heidelberg, Germany, 6Internal Medicine V, Heidelberg University Hospital, Heidelberg, Germany (3)

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Protease-resistant streptavidin for interaction proteomics

Streptavidin-mediated enrichment is a powerful strategy to identify biotinylated biomolecules and their interaction partners by mass spectrometry. Since contamination by streptavidin limits protein identification, we here present protease-resistant streptavidin beads (prS). Their application to diff...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2025-04-08 | PXD015858 | Pride

Protease-resistant streptavidin for interaction proteomics

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2020-05-27 | PXD016576 | Pride

Streptavidin Affinity purification Mass spectrometry Dna pull down Chip sicap Lipid binding protein Bioid Membrane protein Chip Biotin

Streptavidin mediated CLEAR-CLIP in desmoplakin-BirA overexpressing mouse keratinocyte

PRJNA1191528 | ENA

Streptavidin mediated CLEAR-CLIP in desmoplakin-BirA overexpressing mouse keratinocyte

Argonautes were found to be located at desomosal plaque. To specifically identify Argonaute binding microRNA-RNA species, Desomoplakin fused biotin ligase BirA was overexpressed in mouse keratinocytes. By pulling down Biotin labled proteins using streptavidin, we examines the functions of Argonautes...

ORGANISM(S): Mus musculus

2025-11-25 | GSE283064 | GEO

Protease-resistant streptavidin for interaction proteomics.

Not available

S-EPMC7218406 | biostudies-literature

Nanomechanics of streptavidin hubs for molecular materials.

Not available

S-EPMC3837471 | biostudies-literature

Structure-guided design of an engineered streptavidin with reusability to purify streptavidin-binding peptide tagged proteins or biotinylated proteins.

Not available

S-EPMC3712923 | biostudies-literature

Streptavidin-Hosted Organocatalytic Aldol Addition.