Structural variants

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Unknown (11610)
Genomics (1458)
Transcriptomics (492)
Proteomics (180)
Other (112)
Genomic (28)
Methylation profiling (14)
Metabolomics (14)
Multiomics (3)

Organisms

Homo sapiens (726)
Mus musculus (147)
Arabidopsis thaliana (22)
Saccharomyces cerevisiae (18)
Zea mays (13)
Caenorhabditis elegans (13)
Drosophila melanogaster (11)
Gallus gallus (8)
Macaca mulatta (8)
Rattus norvegicus (6)
synthetic construct (6)
Glycine max (5)
Canis lupus familiaris (4)
Bos taurus (3)
Pan troglodytes (3)
Globodera pallida (2)
Heliconius melpomene (2)
Schizosaccharomyces pombe (2)
Sus scrofa (2)
Pongo abelii (2)
Severe acute respiratory syndrome-related coronavirus (1)
Peromyscus leucopus (1)
Puccinia striiformis f. sp. tritici 08/21 (1)
Thermus thermophilus HB8 (1)
Trichomonas vaginalis (1)
Ralstonia pickettii (1)
Brugia malayi (1)
Cucumis melo (1)
Dickeya dadantii 3937 (1)
Equus caballus (1)

Organisms

Homo sapiens (370)
Mus musculus (74)
Saccharomyces cerevisiae (10)
Arabidopsis thaliana (8)
synthetic construct (5)
Caenorhabditis elegans (5)
Drosophila melanogaster (4)
Vitis vinifera (4)
Escherichia coli (4)
Danio rerio (4)
Macaca mulatta (3)
Glycine max (3)
Gallus gallus (3)
Severe acute respiratory syndrome coronavirus 2 (3)
Oryza sativa (3)
Zea mays (3)
Neurospora tetrasperma (2)
Pantherophis guttatus (2)
Anolis carolinensis (2)
Oncorhynchus mykiss (2)
Hordeum vulgare (2)
Acinetobacter baumannii (2)
Prunus persica var. nucipersica (1)
Escherichia coli REL606 (1)
Spodoptera frugiperda multiple nucleopolyhedrovirus (1)
Orthopoxvirus vaccinia (1)
Bradysia coprophila (1)
Coccidioides posadasii (1)
Puccinia graminis f. sp. tritici (1)
Panicum sumatrense (1)

Repository

ENA (1019)
biostudies-arrayexpress (397)
geo (346)
EGA (271)
pride (149)
MassIVE (31)
dbGaP (28)
EVA (20)
GPMDB (16)
MetaboLights (14)
iProX (3)
PanoramaPublic (2)
PeptideAtlas (2)
PAXDB (1)

Tissue

Cell culture (25)
Epithelial cell (7)
Fibroblast (7)
Permanent cell line cell (6)
Colon (5)
Kidney (5)
Brain (4)
Leaf (4)
Monocyte (3)
Stem cell (3)
Breast (2)
Blood (2)
Cell suspension culture (2)
Colonic mucosa (2)
Heart (2)
Liver (2)
Lung (2)
Muscle (2)
Plant cell (2)
Primary cell (2)
Saliva (2)
Skin (2)
Venom gland (2)
Binucleate (1)
Bone cell (1)
Bronchial epithelium (1)
Cardiac muscle (1)
HEK-293 cell (1)
HEK-293T cell (1)
HeLa cell (1)

Disease

Not Available (16)
COVID-19 (5)
Avian influenza (3)
Breast cancer (3)
Colon cancer (3)
Influenza (3)
Acute leukemia (2)
Amyotrophic lateral sclerosis (2)
Angelman syndrome (2)
Primary medulloblastoma (1)
Mitochondrial disease (1)
Multiple congenital malformation (1)
Normal (1)
Breast Carcinoma (1)
Alport syndrome (1)
Autism spectrum disorder (1)
Bartonellosis (1)
Bordetella parapertussis whooping cough (1)
Charcot-Marie-Tooth disease (1)
Ciliopathy (1)
Developmental and epileptic encephalopathy 9 (1)
Giardiasis (1)
Hemoglobinopathy (1)
Huntington Disease (1)
Melanoma (1)
Neurodegenerative disease (1)
Neurodevelopmental disorder with cerebellar atrophy and motor dysfunction (1)
Pertussis (1)
Primary hyperoxaluria type 1 (1)
Schizophrenia (1)

Technology Type

Mass Spectrometry (149)
Shotgun proteomics (50)
Bottom-up proteomics (39)
Data-dependent acquisition (28)
Illumina HiSeq 2000 (27)
Affinity purification coupled with mass spectrometry proteomics (19)
Chemical cross-linking coupled with mass spectrometry proteomics (17)
Mass spectrometry (12)
Gel-based experiment (10)
Data-independent acquisition (9)
HDMSE (9)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (7)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, Illumina Genome Analyzer II (2)
Mass spectrometry assay (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
OXFORD_NANOPORE, MinION (1)
Illumina HiSeq 2500, ILLUMINA, NextSeq 500 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
ILLUMINA, Illumina MiSeq (1)
ILLUMINA, RNAseq, Illumina HiSeq 2000, Illumina Human Methylation 450k BeadChip (1)
Ion Torrent Proton, Illumina HiSeq 2000 (1)
Complete Genomics, Complete Genomics - CG Build 1.4.2.8 (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
Illumina HiSeq 2500 (1)
Complete Genomics, unspecified (1)
Illumina MiSeq (1)
Illumina HiSeq 2000, ILLUMINA (1)

Instrument Platform

Illumina HiSeq 2000 (22)
Illumina NovaSeq 6000 (20)
Illumina HiSeq 2500 (11)
NextSeq 500 (9)
Illumina MiSeq (5)
Illumina HiSeq 4000 (5)
Illumina Genome Analyzer IIx (4)
Illumina NovaSeq X (4)
MinION (4)
NextSeq 550 (4)
Illumina HiSeq (2)
Illumina Genome Analyzer II (2)
GridION (2)
NextSeq 2000 (2)
Using NEBNext Ultra II DNA Library (1)
Sony MA-900 cell sorter (1)
RNA Qubit (Invitrogen Q32852) (1)
Zymo Quick-RNA Microprep Kit (Zymo Research R1051) (1)
12-well plates (Sarstedt 83.3921), 24-Well Plates (1)
Sequel II (1)
Chromium 10x (1)
Illumina Omni1-Quad Beadchip (1)
Complete Genomics (1)
Agilent DNA Microarray Scanner (1)
Axon GenePix 4000B scanning hardware (1)
None (1)
TruSeq® Nano (1)
Ion Torrent Proton (1)
Illumina HiSeq 1000 (1)
DNBSEQ-T7 (1)

Publication Date

2026 (115)
2025 (99)
2024 (76)
2015 (72)
2010 (57)
2014 (55)
2023 (53)
2022 (52)
2012 (50)
2013 (44)
2011 (44)
2021 (41)
2019 (39)
2016 (38)
2020 (37)
2018 (29)
2017 (20)
2009 (15)
2008 (14)
2007 (7)
2006 (3)
2004 (2)

UNIPROT ID/AC

9685.ENSFCAP00000000151 (1)
9685.ENSFCAP00000000248 (1)
9685.ENSFCAP00000000262 (1)
9685.ENSFCAP00000000263 (1)
9685.ENSFCAP00000000264 (1)
9685.ENSFCAP00000000265 (1)
9685.ENSFCAP00000000266 (1)
9685.ENSFCAP00000000268 (1)
9685.ENSFCAP00000000269 (1)
9685.ENSFCAP00000000272 (1)
9685.ENSFCAP00000000275 (1)
9685.ENSFCAP00000000295 (1)
9685.ENSFCAP00000000561 (1)
9685.ENSFCAP00000000816 (1)
9685.ENSFCAP00000000920 (1)
9685.ENSFCAP00000001179 (1)
9685.ENSFCAP00000001206 (1)
9685.ENSFCAP00000001692 (1)
9685.ENSFCAP00000001790 (1)
9685.ENSFCAP00000001993 (1)
9685.ENSFCAP00000002741 (1)
9685.ENSFCAP00000002944 (1)
9685.ENSFCAP00000003079 (1)
9685.ENSFCAP00000003529 (1)
9685.ENSFCAP00000004423 (1)
9685.ENSFCAP00000004671 (1)
9685.ENSFCAP00000005343 (1)
9685.ENSFCAP00000006008 (1)
9685.ENSFCAP00000006212 (1)
9685.ENSFCAP00000006273 (1)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000176092 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:74965 (7)
CHEBI:48430 (7)
CHEBI:17754 (7)
CHEBI:28044 (7)
CHEBI:15428 (7)
CHEBI:133186 (6)
CHEBI:25013 (6)
CHEBI:90344 (6)
CHEBI:133096 (6)
CHEBI:133089 (6)
CHEBI:133469 (6)
CHEBI:132948 (6)
CHEBI:61695 (6)
CHEBI:46215 (6)
CHEBI:84415 (6)
CHEBI:45441 (6)
CHEBI:17768 (6)
CHEBI:21626 (6)
CHEBI:40410 (6)
CHEBI:91315 (6)
CHEBI:73087 (6)
CHEBI:27487 (6)
CHEBI:24462 (6)
CHEBI:82968 (6)
CHEBI:82966 (6)
CHEBI:741548 (6)
CHEBI:59783 (6)
CHEBI:89228 (6)
CHEBI:84822 (6)
CHEBI:70959 (6)

Metabolite Name

N-acetylhistidine (8)
Cysteinylglycine (6)
5-acetylamino-6-formylamino-3-methyluracil (6)
Arabitol/xylitol (6)
Methionine sulfone (6)
2-aminophenol sulfate (6)
Lanthionine (6)
N-methylproline (6)
3-aminoisobutyrate (6)
Trimethylamine N-oxide (6)
Threonate (6)
Stachydrine (6)
Serotonin (6)
Pyridoxate (6)
Prolylglycine (6)
Pipecolate (6)
Phosphate (6)
Phenol sulfate (6)
P-cresol sulfate (6)
Palmitoyl sphingomyelin (d18:1/16:0) (6)
O-sulfo-L-tyrosine (6)
Orotidine (6)
N-formylmethionine (6)
N-acetylthreonine (6)
N-acetyltaurine (6)
N-acetylputrescine (6)
N-acetylphenylalanine (6)
N-acetylneuraminate (6)
N-acetylleucine (6)
N-acetylglycine (6)

First Public Date

2026 (188)
2025 (135)
2024 (124)
2023 (81)
2022 (74)
2020 (71)
2019 (70)
2021 (53)
2018 (42)
2015 (42)
2014 (41)
2016 (32)
2013 (29)
2017 (28)
2012 (8)
2010 (1)

Classification

bacteria (13)
viruses (6)
fungi (4)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (120)
RNA-seq of coding RNA (77)
Comparative genomic hybridization by array (53)
ChIP-seq (28)
DNA-seq (21)
RNA-seq of non coding RNA (19)
Other (17)
Methylation profiling by array (10)
Unknown experiment type (8)
ChIP-chip by tiling array (5)
ChIP-chip by array (5)
Genotyping by array (5)
RNA-seq of total RNA (5)
Cell line - High-throughput sequencing (4)
Transcription profiling by tiling array (3)
RNA-seq of coding RNA from single cells (3)
CLIP-seq (2)
Genotyping by high throughput sequencing (2)
Tiling path by array (1)
Animal - Single-cell sequencing (1)
4C (1)
ATAC-seq (1)
Hi-C (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (1440)
2025 (1370)
2023 (1311)
2021 (1188)
2024 (1084)
2020 (827)
2019 (658)
2018 (538)
2017 (484)
2016 (481)
2015 (435)
2014 (405)
2012 (295)
2013 (293)
2011 (257)
2010 (216)
2026 (196)
2009 (146)
2008 (128)
2007 (88)
2006 (50)
2005 (29)
2003 (24)
2004 (17)
2000 (12)
2002 (11)
2001 (10)
1999 (8)
1998 (5)
1992 (1)

Lab affiliation

Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (3)
Shenzhen People’s Hospital (3)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (2)
Bioanalytics, Leibnizinstitut für analytische Wissenschaften-ISAS-e.V., Germany (2)
Department of Chemistry, King’s College London, SE1 1DB, London, UK Faculty of Biology, Medicine and Health, School of Biological Sciences, The University of Manchester, M13 9PT, Manchester, UK Manchester Institute of Biotechnology, The University of Manchester, M1 7DN, Manchester, UK (2)
Department of Experimental Medicine, University of Tor Vergata, Rome, Italy (2)
Institute of Microbiology of the CAS, v. v. i. (2)
Institute of Microbiology,The Czech Academy of Sciences (2)
Laboratory of Structural Biology and Cell Signaling Institute of Microbiology of the Czech Acad Sci Prumyslova 595 252 50 Vestec Czech Republic (2)
National Center for Biotechnology (CNB-CSIC), Department of Macromolecular Structures) (2)
1 Max Planck Fellow Group Molecular Physiology of Microbes, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany 2 Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany 3 Department of Chemistry, University of Marburg, Marburg, Germany (1)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1: Department of Molecular Biology, Division of Chemistry andBioanalytics, University of Salzburg, Hellbrunner Strasse 34, 5020 Salzburg, Austria 2: Christian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunner Strasse 34, 5020 Salzburg, Austria (1)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (1)
Associate Professor of Biochemistry Schulich School of Medicine and Dentistry Scientist, Children’s Health Research Institute (CHRI) Medical Sciences Building 358 Western University London, Ontario N6A 5C1, Canada (1)
Associate professor, department of Biology. University of Rochester,NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA (lab head) (1)
Astbury Centre for Structural Molecular Biology and School of Molecular and Cellulat Biology, University of Leeds (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, School of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT (1)
Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (1)
BioMedizinisches Centrum - LMU Molecular Biology Großhaderner Str. 9 82152 Planegg-Martinsried GERMANY (1)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
CNIC (1)
Center for Cellular and Molecular Diagnostics, Department of Biochemistry and Molecular Biology, School of Medicine, Tulane University (1)
Center for Medical Biochemistry, Max Perutz Labs, Medical University of Vienna, Vienna BioCenter(VBC), Austria (1)
Center for Proteomics and Metabolomics, Leiden Cniversity Medical Center, The Netherlands (1)
Centre for Proteome Research, Biochemistry and Systems Biology Department, University of Liverpool (1)
Centre for Structural Systems Biology CSSB, Deutsches Elektronen-Synchrotron DESY & Leibniz Institute of Virology (LIV) & University of Lübeck, Notkestr. 85, 22607 Hamburg, Germany Institute of Chemistry and Metabolomics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany (1)
Chemistry Department, University of Texas at Dallas, Richardson. TX (1)
Deparetmento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil. (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)

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Rare genetic variants affecting urine metabolite levels link population variation to inborn errors of metabolism

We investigated the cumulative contribution of rare, exonic genetic variants on the concentration of 1,487 metabolites and 53,714 metabolite ratios in urine by performing gene-based tests based on 226,233 variants from up to 4,864 participants of the German Chronic Kidney Disease (GCKD)...

2021-03-09 | MTBLS284 | MetaboLights

Validation of genomic structural variation predictions in fruit flies

Whole-genome tiling arrays were used to validate deletions and tandem duplications that were inferred based on next-generation sequencing data. The arrays were generated for six samples of the Drosophila melanogaster Genetic Reference Panel (DGRP) as well as the Berkeley reference strain. Structural...

ORGANISM(S): Drosophila melanogaster

2012-11-29 | E-MTAB-1105 | biostudies-arrayexpress

Integrative Analysis of Pathogenic Structural Variants in Leukemia Genomes

Pathogenic Structural Variants in Leukemia Genomes

PRJEB50975 | ENA

Structural characterization of ribosome variants

PRJNA414663 | ENA

Structural variants drive context dependent oncogene activation in cancer

PRJNA613064 | ENA

Fine-Scale Mapping and Sequencing of Structural Variation from Eight Human Genomes

Genetic variation amongst individual humans occurs on many different scales, ranging from gross alterations in the human karyotype to single-nucleotide changes. In this manuscript we explore variation on an intermediate scale-particularly insertions, deletions, and inversions affecting from a few t...

ORGANISM(S): Homo sapiens

2008-05-01 | E-GEOD-10037 | biostudies-arrayexpress

Linked-Read Sequencing to Resolve Complex Structural Variants

PRJNA516493 | ENA

Linked-Read Sequencing to Resolve Complex Structural Variants

PRJNA516494 | ENA

Expression data from leukemic patients with complex structural variants

PRJNA511661 | ENA

Proteostasis Landscapes of Selective versus Poorly Responsive CFTR Variants Reveals Structural Vulnerabilities to Correction

Cystic Fibrosis (CF) is a lethal genetic disorder caused by variants in CF transmembrane conductance regulator (CFTR). Many disease variants are treatable with corrector compounds, which enhance the folding and trafficking of CFTR. However, correctors fail to elicit a response for every CFTR variant...

ORGANISM(S): Homo sapiens (Human)

2025-10-27 | PXD055156 | Pride

Proteomics Cf Cftr Interactomics Ap-ms Vx-445

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