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ProteomicsA novel tool, Multiple Marker Abundance Profiling, uses Selected Reaction Monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.
Methods were investigated that would deliver rapid and semi-quantitative analysis of the subcellular composition of Arabidopsis samples, as the standard technique for this i.e. immunoblotting is difficult to quantify and relies on a very few protein targets, whose responses to developmental or envir...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-03-02 | PXD004576 | Pride
Srm Subcellular proteomics Organelle Arabidopsis Quantitation Shotgun 
ProteomicsA novel tool, Multiple Marker Abundance Profiling, uses Selected Reaction Monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.
Methods were investigated that would deliver rapid and semi-quantitative analysis of the subcellular composition of Arabidopsis samples, as the standard technique for this i.e. immunoblotting is difficult to quantify and relies on a very few protein targets, whose responses to developmental or envir...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-26 | PXD005408 | Pride
Srm Subcellular proteomics Organelle Arabidopsis Quantitation Shotgun 
ProteomicsSubcellular proteomics combined with bioenergetic phenotyping reveals protein biomarkers of respiratory insufficiency in the setting of compromised mitochondrial DNA repair.
The mitochondrial mutator mouse is a well-established model of premature aging in which a progeroid phenotype is driven by the accumulation of somatic mtDNA mutations. Despite evidence of bioenergetic disruption within the cardiac mitochondria, there is little information about the underlying change...
ORGANISM(S): Mus Musculus (mouse) 
2021-01-08 | PXD017000 | JPOST Repository
UnknownDevelopment of a UPLC-MRM-based targeted proteomic method to profile subcellular organelle marker proteins from human liver tissues.
Not available
S-EPMC9243099 | biostudies-literature
ProteomicsArabidopsis thaliana non aqueous fractionation LC-MS/MS analysis of genotypes Ler (Landsberg erecta) and gin2-1 (glucose insensitive (hexokinase 1)) time series analysis under normal, chilling temperature and highlight+heat.
Plant cells are characterized by a high degree of compartmentalization and a diverse proteome and metabolome. Only a very limited number of studies has addressed combined subcellular proteomics and metabolomics which strongly limits biochemical and physiological interpretation of large-scale omics d...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-08-05 | PXD013646 | Pride
Arabidopsis thaliana Time series Subcellular protein marker Subcellular analysis Hexokinase 1 Cold Highlight Non aqueous fractionation Photorespiration Gin2-1 
UnknownApplication of proteomic marker ensembles to subcellular organelle identification.
Not available
S-EPMC2830848 | biostudies-literature
UnknownSubcellular Phenotyping: Using Proteomics to Quantitatively Link Subcellular Leaf Protein and Organelle Distribution Analyses of Pisum sativum Cultivars.
Not available
S-EPMC6534152 | biostudies-literature
UnknownPSL-LCCL: a resource for subcellular protein localization in liver cancer cell line SK_HEP1.
Not available
S-EPMC9248857 | biostudies-literature
GenomicsProfiling RNA subcellular localization in situ by TATA-seq
Profiling RNA subcellular localization in situ by TATA-seq
PRJNA1214705 | ENA
UnknownMultiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.
Not available
S-EPMC5863471 | biostudies-literature
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