Sugiyama S S - OmicsDI

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Unknown (1229)
Transcriptomics (31)
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Homo sapiens (17)
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Helicobacter pylori F16 (1)
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cellular organisms (1)
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Organisms

Homo sapiens (4)
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Repository

biostudies-arrayexpress (31)
jPOST (14)
pride (10)
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Tissue

Cell culture (4)
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Disease

Colon cancer (2)
Disease free (1)
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Tongue squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (10)
Shotgun proteomics (8)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
G2565BA DNA microarray scanner [Agilent] (1)
LTQ Orbitrap Velos (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2015 (7)
2013 (7)
2023 (6)
2011 (5)
2007 (4)
2026 (4)
2014 (3)
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2019 (3)
2009 (2)
2008 (2)
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2020 (2)
2016 (1)
2012 (1)
2010 (1)
2005 (1)
2018 (1)
2025 (1)
2017 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15676 (2)
CHEBI:15793 (2)
CHEBI:15887 (2)
CHEBI:15940 (2)
CHEBI:16040 (2)
CHEBI:16235 (2)
CHEBI:16244 (2)
CHEBI:16335 (2)
CHEBI:16347 (2)
CHEBI:16359 (2)
CHEBI:16467 (2)
CHEBI:16543 (2)
CHEBI:16643 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16856 (2)
CHEBI:16919 (2)
CHEBI:17154 (2)
CHEBI:17191 (2)
CHEBI:17295 (2)
CHEBI:17368 (2)
CHEBI:17562 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:17750 (2)
CHEBI:17752 (2)
CHEBI:17821 (2)
CHEBI:17929 (2)

Metabolite Name

2-Aminophenol (2)
Acetylcarnitine (2)
Adenine (2)
Adenosine (2)
Betaine (2)
Choline (2)
Creatine (2)
Creatinine (2)
Cytidine (2)
Cytosine (2)
Guanine (2)
Hypoxanthine (2)
L-Carnitine (2)
L-Isoleucine (2)
L-Methionine (2)
L-Phenylalanine (2)
Theobromine (2)
Thymine (2)
Trigonelline (2)
Uracil (2)
Xanthine (2)
(+)-Costunolide (1)
(S)-Dihydroorotate (1)
1,2-Cyclohexanedione (1)
1,4-Cyclohexanedicarboxylic Acid (1)
1,4-Cyclohexanedione (1)
1,5-Naphthalenediamine (1)
1-Aminocyclopropane-1-Carboxylate (1)
1-Heptadecanoyl-2-Hydroxy-Sn-Glycero-3-Phosphocholine (1)
1-Imidazoleacetic acid (1)

First Public Date

2014 (4)
2017 (1)

Study type

Transcription profiling by array (27)
ChIP-chip by tiling array (2)
Other (1)
RNA-seq of coding RNA (1)

Release Date

2022 (163)
2023 (129)
2021 (124)
2025 (112)
2024 (111)
2020 (105)
2019 (77)
2018 (68)
2017 (64)
2015 (62)
2016 (56)
2014 (47)
2026 (27)
2013 (25)
2012 (23)
2011 (18)
2010 (12)
2009 (12)
2005 (6)
2008 (4)
2007 (4)
2006 (3)
2004 (2)
1997 (2)
2002 (1)
2001 (1)
2000 (1)
1999 (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
AG Fischer BZH University Heidelberg INF 328 69120 Heidelberg Germany (1)
Department of Laboratory Medicine, University of California, San Francisco, USA (1)
ETH Zurich, Institute of Molecular Systems Biology (1)
Marine Chemistry and Geochemistry Woods Hole Oceanographic Institute (1)
Proteomics Research Translational Technology Platform, Cancer Research UK-UCL Centre, UCL Cancer Institute, University College London, UK ( lab head ) (1)
University of Wisconsin-Madison. Biochemistry Dept. Biotechnology Center. (1)

Tags

xref:PubMed:24457603 (3)
xref:PubMed:19228201 (1)
xref:PubMed:26171167 (1)

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Expression analyses of red5-2 mutant cells

Investigation of whole genome gene expression level changes in red5-2, compared to the wild-type strain. The mutants analyzed in this study will be described in Sugiyama and Sugiyama. A mRNA profiling study using total RNA recovered from wild-type culture of fission yeast and red5-2 mutant cultures ...

ORGANISM(S): Schizosaccharomyces pombe

2013-05-15 | E-GEOD-44714 | biostudies-arrayexpress

FASN inhibitor TVB-3166 prevents S-acylation of the spike protein of human coronaviruses.

Not available

S-EPMC9339154 | biostudies-literature

Crystallographic and mutational analyses of cystathionine β-synthase in the H₂ S-synthetic gene cluster in Lactobacillus plantarum.

Not available

S-EPMC5368070 | biostudies-literature

mTORC1-independent translation control in mammalian cells by methionine adenosyltransferase 2A and S-adenosylmethionine.

Not available

S-EPMC9243181 | biostudies-literature

Transcription profiling of mouse renal epithelial cells from inv mutant animals

Nephronophthisis (NPHP) is a group of progressive renal disorders characterized by a variable number of cysts associated with cortical tubular atrophy. Recently, mutations in INV have been identified to be responsible for NPHP2. The inv/inv,inv-deltaC::GFP mouse that was created by introduction of ...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4462 | biostudies-arrayexpress

Bisphenol-A reduces DNA methylation after metabolic activation.

Not available

S-EPMC9316663 | biostudies-literature

Therapeutic efficacy of the optimization of thyroid function, thrombophilia, immunity and uterine milieu (OPTIMUM) treatment strategy on pregnancy outcomes after single euploid blastocyst transfer in advanced age women with recurrent reproductive failure.

Not available

S-EPMC10739138 | biostudies-literature

Transcriptomic profiling analysis of human endometrial stromal cells treated with autologous platelet-rich plasma.

Not available

S-EPMC9868347 | biostudies-literature

Impact of chronic endometritis on endometrial receptivity analysis results and pregnancy outcomes.