Sun Siqi S - OmicsDI

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Proteomics (3)
Transcriptomics (2)
Metabolomics (1)

Organisms

Homo sapiens (2)
Oryza sativa Japonica Group (1)
Rattus norvegicus (1)
Aspergillus giganteus (1)
Meyerozyma guilliermondii (1)
Staphylococcus aureus subsp. aureus MRSA252 (1)
environmental samples (1)
Gallus (1)
Moringa oleifera (1)
Passer hispaniolensis (1)
Cynara cardunculus var. scolymus (1)
Passer domesticus domesticus (1)
Phytophthora nicotianae (1)
organismal metagenomes (1)
Lacticaseibacillus rhamnosus (1)
Limosilactobacillus reuteri (1)
Pseudomonas sp. M1 (1)
Leptospira biflexa serovar Patoc (1)
Fusarium sp. (1)
Gorilla (1)
Tetronarce californica (1)
Methanosarcina acetivorans (1)
Streptomyces mirabilis (1)
Lolium multiflorum (1)
Pseudomonas phage PaMx74 (1)
Penicillium sp. B12 (1)
Schizosaccharomyces pombe strain SPY73 975 h+ (1)
Euroleon nostras (1)
Cucumis melo (1)
Aspergillus puulaauensis (1)

Repository

biostudies-arrayexpress (2)
iProX (2)
MetaboLights (1)
pride (1)

Tissue

Esophageal epithelium (1)

Disease

Esophagus squamous cell carcinoma (1)

Technology Type

Mass spectrometry (1)
SWATH MS (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2016 (1)
2005 (1)
2023 (1)
2019 (1)
2021 (1)
2015 (1)

CHEBI ID

CHEBI:167859 (1)
CHEBI:167856 (1)
CHEBI:167854 (1)
CHEBI:167851 (1)
CHEBI:167848 (1)
CHEBI:167847 (1)
CHEBI:167844 (1)
CHEBI:167843 (1)
CHEBI:167841 (1)
CHEBI:167839 (1)
CHEBI:167834 (1)
CHEBI:167831 (1)
CHEBI:167829 (1)
CHEBI:167828 (1)
CHEBI:167813 (1)
CHEBI:167811 (1)
CHEBI:167805 (1)
CHEBI:167801 (1)
CHEBI:167799 (1)
CHEBI:167793 (1)
CHEBI:167791 (1)
CHEBI:167787 (1)
CHEBI:167778 (1)
CHEBI:167776 (1)
CHEBI:167773 (1)
CHEBI:167772 (1)
CHEBI:167769 (1)
CHEBI:167767 (1)
CHEBI:167764 (1)
CHEBI:167759 (1)

Metabolite Name

3-acetyl-11-keto-beta-boswellic acid (1)
3-methyl-2-oxindole (1)
2-trans-hexadecenoic acid (1)
Rac-glycerol 1-myristate (1)
Methyl 2-hydroxy-4-{3-[(4-oxo-3-phenyl-4h-chromen-7-yl)oxy]propoxy}-3-propylbenzoate (1)
Palmitelaidic acid methyl ester (1)
5-hydroxy-3-(hydroxymethyl)-6-isopropyl-2-oxo-3-cyclohexen-1-yl 3-methylpentanoate (1)
N-[2-(trifluoromethyl)phenyl]pyrrolidine-1-carbothioamide (1)
7-hydroxytestosterone (1)
4-(methylthio) aniline (1)
Methyl 4-(aminocarbonyl)-n-cyanotetrahydropyridine-1(2H)-carbimidothioate (1)
Alpha-pinene-2-oxide (1)
18-beta-glycyrrhetinic acid (1)
Ethyl 3-[2-(diphenylmethylidene)hydrazino]but-2-enoate (1)
N-[3-(aminosulfonyl)phenyl]-2-phenoxynicotinamide (1)
5-dihydrotestosterone (1)
3-{4-[(4-fluorophenyl)sulfonyl]piperazino}-4H-chromen-4-one (1)
Delta9-THC (1)
3-(benzylamino)-5-(4-chlorophenyl)cyclohex-2-en-1-one (1)
L-aspartic acid beta-benzyl ester (1)
Beta-asarone (1)
11-hydroxy-17-methyltestosterone (1)
6-O-methylscutellarin (1)
DL-metanephrine (1)
4-methoxycinnamaldehyde (1)
6-hydroxycortisol (1)
N1-[2-({[3-chloro-5-(trifluoromethyl)-2-pyridyl]methyl}thio)ethyl]benzamide (1)
Ethyl 3-cyano-6-methyl-2-({2-[(2-thienylcarbonyl)amino]phenyl}thio)isonicotinate (1)
2-(propylthio)nicotinic acid (1)
N'-cyano-N-[2-(trifluoromethyl)phenyl]pyrrolidine-1-carboximidamide (1)

Study type

Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2016 (1)
2005 (1)

Lab affiliation

BGI-Shenzhen,China (1)

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MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice

Responses to drought in rice are regulated by transcription factor OsbZIP46 via ABA signaling. This work characterizes a protein MODD that negatively regulates OsbZIP46 activity and stability through HDAC-related chromatin remodeling and OsPUB70-mediated ubiquitination, respectively, to fine tune AB...

ORGANISM(S): Oryza sativa Japonica Group

2016-09-07 | E-GEOD-83075 | biostudies-arrayexpress

The trans-omics landscape of COVID-19

The outbreak of coronavirus disease 2019 (COVID-19) is a global health emergency. Various omics results have been reported for COVID-19, but the molecular hallmarks of COVID-19, especially in those patients without comorbidities, have not been fully investigated. Here we collect blood samples from 2...

2021-10-06 | MTBLS2542 | MetaboLights

The dataset to discover ESCC related proteins

To discover ESCC related proteins, we used SWATH to quantify the protein abundance between ESCC and adjacent tissues. Briefly, we pooled 10 ESCCtissues and their corresponding adjacent tissues for SWATH acquisition with three replicates.Three DDA repeats were also acquired with the pooled 10-paired ...

ORGANISM(S): Homo sapiens (Human)

2015-09-22 | PXD001764 | Pride

The essential role of stress granules in cGAS sensing of DNA

cGAS-associated cellular proteins through performing co-immunoprecipitation (co-IP) followed by mass spectrometry and proteomic analysis

ORGANISM(S): Homo Sapiens

2019-02-24 | PXD012847 |

Development of a Large-Scale Chemogenomics Database to Improve Drug Candidate Selection

Development of a Large-Scale Chemogenomics Database to Improve Drug Candidate Selection and to Understand Mechanisms of Chemical Toxicity and Action These data support the publication titled "Development of a Large-Scale Chemogenomics Database to Improve Drug Candidate Selection and to Understa...

ORGANISM(S): Rattus norvegicus

2005-05-31 | E-GEOD-2409 | biostudies-arrayexpress

ERK and USP5 govern PD-1 homeostasis via deubiquitination to modulate tumor immunotherapy

The programmed cell death protein 1 (PD-1) is an inhibitory receptor on T cells and plays an important role in promoting cancer immune evasion. While ubiquitin E3 ligases for regulating PD-1 stability have been reported, deubiquitinase (DUB) governing PD-1 homeostasis to modulate tumor immunotherapy...