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MetabolomicsBridging Targeted (Zeno MRM-HR) and Untargeted (SWATH) LC–HRMS in a Single Run for Sensitive Exposomics

Traditionally, chemical exposure has been assessed by low-resolution mass spectrometry via targeted approaches due to the typically extremely low concentration of such compounds in biological samples. Nevertheless, untargeted approaches are now becoming a promising tool for a broader investigatio...

2025-08-28 | MTBLS10565 | MetaboLights
ProteomicsSWATH mass spectrometry as a tool for quantitative profiling of the matrisome
Proteomic analysis of extracellular matrix (ECM) and ECM-associated proteins, collectively known as the matrisome, is a challenging task due to its inherent complexity and insolubility. Here we present sequential window acquisition of all theoretical fragment ion spectra mass spectrometry (SWATH MS)...
ORGANISM(S): Mus musculus (Mouse) 
2018-03-19 | PXD008651 | Pride
Proteomics Mass spectrometry Dia ms Extracellular matrix Matrisome Swath ms 
MetabolomicsCustomized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow
Data independent acquisition-mass spectrometry (DIA-MS) coupled with liquid chromatography is a promising approach for rapid, automatic sampling of MS/MS data in untargeted metabolomics. However, wide isolation windows in DIA-MS generate MS/MS spectra containing a mixed population of fragment ions t...
2018-03-26 | MTBLS417 | MetaboLights
UnknownMulti-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.
Not available
S-EPMC5566333 | biostudies-literature
UnknownSWATH mass spectrometry as a tool for quantitative profiling of the matrisome.
Not available
S-EPMC6215756 | biostudies-literature
UnknownTracking genome-editing and associated molecular perturbations by SWATH mass spectrometry.
Not available
S-EPMC6811567 | biostudies-literature
ProteomicsSWATH mass spectrometry performance using extended ion assay libraries
The use of data-independent acquisition methods such as SWATH for mass spectrometry based proteomics is usually performed using peptide MS/MS reference ion assay libraries which enable identification and quantitation of peptide peak areas. Reference assay libraries can be generated locally through ...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2016-05-12 | PXD002836 | Pride
Extended library Dia Swath 
UnknownSWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries.
Not available
S-EPMC4937520 | biostudies-literature
UnknownProteomic analysis of synovial fluid in osteoarthritis using SWATH‑mass spectrometry.
Not available
S-EPMC5783497 | biostudies-literature
UnknownBreast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry.
Not available
S-EPMC6656695 | biostudies-literature
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