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UnknownData-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.
Not available
S-EPMC6088389 | biostudies-literature
MetabolomicsCustomized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow
Data independent acquisition-mass spectrometry (DIA-MS) coupled with liquid chromatography is a promising approach for rapid, automatic sampling of MS/MS data in untargeted metabolomics. However, wide isolation windows in DIA-MS generate MS/MS spectra containing a mixed population of fragment ions t...
2018-03-26 | MTBLS417 | MetaboLights
ProteomicsQuantitative proteomic analysis of fresh-frozen human breast tissue and tumor samples using microLC-SWATH-MS
Future improvements in the field of breast cancer prevention, diagnosis and treatment require deeper knowledge and better understanding of the molecular processes and signaling pathways that lead to the transformation of normal cells to cancer ones and the disease progression. Quantitative proteome ...
ORGANISM(S): Homo sapiens (Human) 
2026-03-16 | PXD008408 | Pride
Breast tissue Fresh frozen Breast tumor Microlc Swath-ms Quantitative proteomics 
ProteomicsVenom Proteomics of Vespa velutina nigrithorax (Hym.: Vespidae) Queens and Workers: A Quantitative SWATH-MS Analysis
Health risks caused by stings from Vespa velutina nigrithorax (VV), also known as the yellow-legged Asian hornet, have become a public concern, but little is known about its venom composition. This study presents the proteome profile of the VV’s venom sac based on Sequential Window Acquisition of al...
ORGANISM(S): Vespa velutina nigrithorax 
2023-05-10 | PXD040764 | Pride
Asian hornet  vespa velutina nigrithorax  vespa spp.  proteomics  swath-ms  hymenopteran  venom  allergy. 
ProteomicsA comprehensive CHO SWATH-MS spectral library for accurate quantitative profiling of 10k proteins
A comprehensive Chinese hamster ovary (CHO)-cell specific spectral library, containing extensive information of high-quality spectral ions covering more than 10k CHO cell proteins, was constructed to provide confident and reproducible protein identification and quantification in data-independent SWA...
ORGANISM(S): Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) 
2020-07-20 | PXD016047 | Pride
Tripletof 6600 Swath-ms Chinese hamster ovary cells Lc-ms/ms 
UnknownSpectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum.
Not available
S-EPMC5821221 | biostudies-literature
UnknownSWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools.
Not available
S-EPMC4824525 | biostudies-literature
ProteomicsSWATH-MS based quantitative proteomics analysis reveals that curcumin alters the metabolic enzyme profile of CML cells by affecting the activity of miR-22/IPO7/HIF-1α axis.
Chronic myelogenous leukemia (CML) is a myeloproliferative disorder caused by expression of the chimeric BCR-ABL tyrosine kinase oncogene, resulting from the t(9;22) chromosomal translocation. Imatinib (gleevec, STI-571) is a selective inhibitor of Bcr-Abl activity highly effective in the treatment...
ORGANISM(S): Homo sapiens (Human) 
2018-07-30 | PXD007771 | Pride
Swath-ms  cml cells  curcumin 
UnknownQuantitative proteomics by SWATH-MS reveals altered expression of nucleic acid binding and regulatory proteins in HIV-1-infected macrophages.
Not available
S-EPMC3993959 | biostudies-literature
ProteomicsQuantitative analysis of large-scale proteomic changes in LPS-activated monocyte-derived dendritic cells: A SWATH-MS study
Determination of global alterations in monocyte-derived dendritic cells in response to stimulation with lipopolysaccharide using SWATH-MS to provide insight into cellular mechanism driving dendritic cell maturation
ORGANISM(S): Homo sapiens (Human) 
2019-03-18 | PXD008898 | Pride
Lipopolysaccharide Antigen presentation Leukocyte metabolism Quantitative proteomics Dendritic cell maturation 
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