Taxonomic classification

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Unknown (1954)
Genomics (1112)
Transcriptomics (49)
Proteomics (26)
Metabolomics (11)
Other (4)
Methylation profiling (2)

Organisms

Homo sapiens (31)
Aerococcus urinae NBRC 15544 = CCUG 36881 (25)
Alteromonadales (25)
Bacteria (25)
Canis lupus familiaris (25)
Carya cathayensis (25)
Ectopseudomonas oleovorans CECT 5344 (25)
Ensifer adhaerens (25)
Enterococcus faecalis (25)
Globicatella sanguinis (25)
Halictus scabiosae (25)
Histomonas meleagridis (25)
Human immunodeficiency virus 1 (25)
Mesocricetus auratus (25)
Methylohalobius crimeensis 10Ki (25)
Mus musculus (25)
Olavius algarvensis sulfate-reducing endosymbiont (25)
Ophrys garganica (25)
Ophrys sphegodes (25)
Mus musculus (16)
Drosophila melanogaster (2)
Escherichia coli (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)
human blood metagenome (1)
Thalassiosira pseudonana CCMP1335 (1)
Thalassiosira pseudonana (1)
feces metagenome (1)
Rattus norvegicus (1)

Organisms

Bacillus velezensis (4)
Levilactobacillus brevis (4)
gut metagenome (4)
human gut metagenome (4)
Clostridium butyricum (3)
Prionailurus bengalensis euptilurus (3)
Bacteria (3)
Trichoglossum hirsutum (2)
Actinoplanes campanulatus (2)
Companilactobacillus paralimentarius (2)
Flavobacterium glycines (2)
Lactobacillus delbrueckii subsp. delbrueckii (2)
Staphylococcus carnosus (2)
Lactobacillus delbrueckii subsp. lactis (2)
Capnocytophaga felis (2)
Streptomyces olivaceus (2)
Klebsiella terrigena (2)
Spirosomataceae (2)
Acinetobacter pengchengensis (2)
Halomonas halophila (2)
Capnocytophaga (2)
Lactobacillus johnsonii (2)
Serratia sarumanii (2)
Priestia megaterium (2)
Pseudomonas (2)
Lacticaseibacillus casei (2)
Micromonospora andamanensis (2)
Enterococcus faecalis (2)
Leuconostoc mesenteroides subsp. mesenteroides (2)
marine metagenome (2)

Repository

ENA (1110)
biostudies-arrayexpress (47)
pride (25)
MetaboLights (11)
geo (9)
EGA (1)
MassIVE (1)

Tissue

Bone (4)
Feces (3)
Cell culture (2)
Tooth (2)
Whole body (2)
Fibroblast (1)
Hair shaft (1)
HeLa cell (1)
Heart (1)
Radula (1)
Stem cell (1)

Disease

Papillary renal cell carcinoma (1)
Bacterial infectious disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (13)
Data-dependent acquisition (7)
Mass spectrometry (5)
Mass spectrometry assay (4)
Bottom-up proteomics (4)
NMR spectroscopy (2)
Gel-based experiment (2)
Metaproteomics (2)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (3)
Direct infusion MS - negative (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - negative - hilic (2)
Illumina MiSeq (1)
TripleTOF 5600 (1)
MS Imaging - Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Gas Chromatography MS - negative - medium-polarity (1)
6210 TOF LC/MS (Agilent) (1)
Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2026 (12)
2015 (8)
2025 (7)
2014 (7)
2022 (7)
2013 (6)
2010 (6)
2016 (5)
2011 (5)
2008 (4)
2021 (4)
2017 (4)
2023 (4)
2007 (3)
2019 (3)
2009 (2)
2018 (2)
2024 (2)
2012 (1)
2020 (1)

CHEBI ID

CHEBI:17568 (4)
CHEBI:15741 (4)
CHEBI:17295 (4)
CHEBI:30769 (4)
CHEBI:23673 (3)
CHEBI:18101 (3)
CHEBI:15887 (3)
CHEBI:16610 (3)
CHEBI:48131 (3)
CHEBI:422 (3)
CHEBI:30768 (3)
CHEBI:15366 (3)
CHEBI:17533 (3)
CHEBI:15891 (3)
CHEBI:6650 (3)
CHEBI:16958 (3)
CHEBI:17148 (3)
CHEBI:16695 (3)
CHEBI:16977 (3)
CHEBI:16235 (3)
CHEBI:15428 (3)
CHEBI:17053 (3)
CHEBI:16414 (3)
CHEBI:17191 (3)
CHEBI:16643 (3)
CHEBI:17596 (3)
CHEBI:17368 (3)
CHEBI:28791 (2)
CHEBI:30764 (2)
CHEBI:28800 (2)

Metabolite Name

Uracil (3)
Citric acid (3)
Quinic acid (3)
Tridecanol (2)
Amidosulfonic acid (2)
2,6-diaminopimelic acid (2)
D-Ornithine (2)
Benzamide (2)
Galacturonic acid (2)
Sedoheptulose 7-phosphate (2)
N6,N6,N6-Trimethyl-L-lysine (2)
DL-Glutamate (2)
PC(16:1(9E)/0:0) (2)
Benzocaine (2)
Leucine (2)
Gallic acid (2)
Vanillic acid (2)
Glycine (2)
Homovanillic acid (2)
Phthalic acid (2)
Cyclohexylamine (2)
Pregabalin (2)
Ferulic acid (2)
Lactitol (2)
L-Aspartic acid (2)
Epsilon-caprolactam (2)
Diethanolamine (2)
Propionic acid (2)
Acetic acid (2)
Syringic acid (2)

First Public Date

2017 (260)
2013 (214)
2026 (136)
2020 (114)
2025 (77)
2019 (71)
2021 (56)
2024 (46)
2022 (40)
2023 (23)
2014 (23)
2015 (20)
2016 (16)
2018 (14)

Classification

bacteria (48)
viruses (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (10)
Other (3)
ChIP-chip by tiling array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Unknown experiment type (1)
DNA-seq (1)

Release Date

2025 (250)
2024 (221)
2022 (220)
2021 (190)
2023 (181)
2020 (151)
2019 (139)
2018 (104)
2017 (92)
2016 (78)
2015 (78)
2014 (52)
2013 (50)
2012 (45)
2011 (32)
2010 (28)
2026 (28)
2009 (17)
2008 (13)
2007 (13)
2004 (7)
2005 (4)
2006 (3)
2002 (2)
1998 (2)
2001 (1)

Lab affiliation

Department of Biomedical Sciences, University of Sassari, Italy (2)
Hohai University (2)
Bioinformatics Unit (MF 1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany (1)
Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (1)
Department of Earth and Environmental Science, Columbia University; Lamont-Doherty Earth Observatory, Columbia University (1)
Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Via Pansini 5, 80131 Naples, Italy (1)
Dr Angela Botes (She/Her) School of Molecular and Cell Biology (MCB) University of the Witwatersrand Email: angela.botes@wits.ac.za Phone: +27 11 717-6312 Private Bag 3, WITS, 2050, Johannesburg, South Africa (1)
Forensic Science Laboratory, Chemcentre, Western Australia (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
Hohai university, China (1)
ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. Da República, 2780-157 Oeiras, Portugal;iBET, Instituto de Biologia Experimental e Tecnológica, Apartado 12, 2780-901, Oeiras , Portugal (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (1)
Laboratoire MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany (1)
MSAP, UAR 3290, CNRS 59655 villeneuve d'Ascq, France (1)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (1)
Otto-von-Guericke-University / Max Planck Institute for Dynamics of Complex Technical Systems, Magdeburg, Germany (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, Belgium (1)
Proteomics and Immunodiagnostics Laboratory, Porto Conte Ricerche s.r.l., Alghero, Italy (1)
School of Life Sciences, Jilin University, Changchun 130012, China (1)
Senior professor and Head, Department of Biotechnology, Alagappa University,Karaikudi-630003 (1)
University of Cádiz/IVAGRO (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (1)

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Appropriate taxonomic classification of intestinal microbiome by 16S rRNA gene targeting metagenomic approach

16S metagenomic analysis has provided much information about the intestinal microbiome. However, there are no reports that describe their appropriate taxonomic classification rank. Moreover, studies differ on the taxonomic ranking of the same microorganism. Intestinal microbiome exerts a significant...

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From defaults to databases: parameter and database choice dramatically impact the performance of metagenomic taxonomic classification tools

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Identification and Characterisation of Taxonomically Informative Peptides

Hair fibers serve as a prevalent and valuable form of biological trace evidence. Taxonomic classification of hair recovered during a criminal investigation provides crucial forensic intelligence and aids in evidence prioritisation. Traditional classification methods rely heavily on the analysis of h...

ORGANISM(S): Mus musculus (Mouse) Vulpes vulpes (Red fox) Sus scrofa domesticus (domestic pig) Ovis aries Bos taurus (Bovine) Camelus dromedarius (Dromedary) (Arabian camel) Vicugna pacos Homo sapiens (Human) Oryctolagus cuniculus (Rabbit) Felis catus (Cat) (Felis silvestris catus) Canis familiaris (Dog) (Canis lupus familiaris) Cavia porcellus (Guinea pig) Rattus norvegicus (Rat) Capra hircus (Goat) Equus caballus (Horse)

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