Tegument - OmicsDI

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Transcriptomics (1713)
Unknown (585)
Genomics (249)
Proteomics (125)
Metabolomics (32)
Other (12)
Multiomics (1)

Organisms

Homo sapiens (1063)
Mus musculus (640)
Rattus norvegicus (42)
Sus scrofa (18)
Danio rerio (18)
Vitis vinifera (17)
Bos taurus (14)
Ovis aries (13)
Schistosoma mansoni (13)
Arabidopsis thaliana (8)
Gallus gallus (7)
Salmo salar (5)
Oryctolagus cuniculus (5)
Oncorhynchus mykiss (5)
Macaca mulatta (5)
Capra hircus (4)
Staphylococcus aureus (4)
Macaca fascicularis (3)
Solanum tuberosum (3)
Heterocephalus glaber (3)
Caenorhabditis elegans (3)
Canis lupus familiaris (3)
Ichthyophthirius multifiliis (2)
Trichophyton rubrum (2)
Cervus elaphus (2)
Ambystoma mexicanum (2)
Gossypium hirsutum (2)
Bombyx mori (2)
Leishmania major (2)
Streptococcus pyogenes (2)

Organisms

Homo sapiens (5)
Schistosoma mansoni (3)
10292 (1)
Chrysodeixis includens (1)
Ovine gammaherpesvirus 2 (1)
Macaca mulatta (1)
Arabidopsis thaliana (1)
Bos taurus (1)

Repository

biostudies-arrayexpress (1755)
EGA (173)
MassIVE (65)
MetaboLights (32)
ENA (25)
pride (20)
geo (17)
jPOST (17)
iProX (14)
PAXDB (6)
EVA (5)
PanoramaPublic (5)
GPMDB (2)
PeptideAtlas (1)

Tissue

Cell culture (5)
Whole body (3)
Fibroblast (2)
Others (1)
Blood cell (1)
Blood plasma (1)
Epithelial cell (1)
Hepatocyte (1)
Integument (1)
Liver (1)
Skin (1)

Disease

Normal (13)
Burn injury (2)
Alopecia (2)
Porphyria NOS (2)
Myelodysplasia (1)
Radiation-induced DNA damage (1)
Burn (1)
Lymph node metastasis (1)
Benign nevi (1)
Gastric carcinoma (1)
Psoriasis vulgaris (1)
Chloracne - MADISH (1)
X-linked Recessive Ichthyosis (1)
Asthma (1)
Aorta aneurysm (1)
B. dendrobatidis infection (1)
Skin clear cell carcinoma (1)
Apert syndrome (1)
Primary tumor (1)
Hutchinson-Gilford Progeria Syndrome (1)
NTN (1)
Kaposi's sarcoma (1)
AIDS-KS, HIV+, nodular (late) stage (1)
Basal cell carcinoma, Gorlin-Goltz syndrome (1)
Systemic sclerosis with diffuse scleroderma (1)
Perilesional skin (hair) (1)
Non-infected (1)
Squamous cell carcinoma (1)
Psoriasis (1)
Limited scleroderma (1)

Technology Type

Illumina (32)
Mass spectrometry (20)
Mass Spectrometry (20)
Mass spectrometry assay (11)
Shotgun proteomics (11)
Illumina HiSeq 2500 (ILLUMINA) (10)
Illumina HiSeq 2000 (4)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2500 (ILLUMINA) (2)
ILLUMINA, Illumina HiSeq 2500 (2)
Illumina HiSeq 2500 (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
SWATH MS (2)
ION_TORRENT, Ion Torrent Proton (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina, unknown (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (ILLUMINA), ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2000, Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 2000 (1)
Complete Genomics, Illumina Genome Analyzer IIx (1)
NMR spectroscopy (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Gel-based experiment (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (64)
Illumina HiSeq 2500 (42)
NextSeq 500 (33)
Illumina HiSeq 2000 (33)
Illumina HiSeq 4000 (27)
NextSeq 550 (8)
Illumina MiSeq (6)
Illumina Genome Analyzer IIx (4)
Bio-Rad CFX96 Real-time System (3)
Illumina Genome Analyzer II (3)
Illumina NovaSeq X (3)
10x Genomics Chromium Controller (3)
Illumina HiSeq 3000 (3)
BD LSRFortessa (2)
Bioanalyzer (2)
NextSeq 1000 (2)
NextSeq 2000 (2)
DNBSEQ-T7 (2)
Illumina HiSeq 1500 (2)
DNBSEQ G40 (1)
NanoDrop 2000 spectrophotometer (1)
DNBSEQ Eukaryotic Stranded Transcriptome library preparation- Stranded mRNA Library (1)
Poly-T oligo-attached magnetic beads (1)
Analyses performed on a Linux HPC cluster with Intel Xeon CPUs (1)
Agilent 4200 TapeStation; PCR thermal cycler (Applied Biosystems) (1)
Qubit Fluorometer 3.0 (Thermo Fisher Scientific, USA); Agilent 4200 TapeStation (Agilent Technologies, USA) (1)
10X Genomics Chromium Controller Instrument, Thermocycler (PCR machine), Bioanalyzer 2200 (Agilent), Qubit Fluorometer (Thermo Fisher Scientific) (1)
Biological safety cabinet, Water bath (37°C), Centrifuge, 70 µm and 35 µm cell strainers, Countstar Fluorescence Cell Analyzer (1)
Surgical scalpel (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)

Publication Date

2014 (210)
2015 (204)
2013 (188)
2012 (174)
2010 (173)
2011 (154)
2016 (105)
2009 (83)
2008 (83)
2023 (60)
2018 (57)
2024 (54)
2021 (49)
2022 (48)
2007 (47)
2019 (40)
2020 (39)
2025 (36)
2017 (33)
2026 (31)
2005 (28)
2006 (20)
2004 (3)
2002 (1)

UNIPROT ID/AC

1433B_HUMAN (5)
1433E_HUMAN (5)
1433F_HUMAN (5)
1433G_HUMAN (5)
1433S_HUMAN (5)
1433T_HUMAN (5)
1433Z_HUMAN (5)
2AAA_HUMAN (5)
2AAB_HUMAN (5)
2ABA_HUMAN (5)
2ABD_HUMAN (5)
3HAO_HUMAN (5)
3HIDH_HUMAN (5)
41_HUMAN (5)
5NTD_HUMAN (5)
6PGD_HUMAN (5)
6PGL_HUMAN (5)
9606.ENSP00000228938 (5)
9606.ENSP00000353600 (5)
9606.ENSP00000372139 (5)
9606.ENSP00000382982 (5)
9606.ENSP00000400906 (5)
9606.ENSP00000409666 (5)
9606.ENSP00000417378 (5)
9606.ENSP00000443017 (5)
9606.ENSP00000475814 (5)
A0A0A0MSP3_HUMAN (5)
A0A0A6YYA0_HUMAN (5)
A0A0J9YYA3_HUMAN (5)
A0A0S2Z6F0_HUMAN (5)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:17822 (10)
CHEBI:18237 (10)
CHEBI:16704 (10)
CHEBI:17368 (10)
CHEBI:22660 (9)
CHEBI:22653 (9)
CHEBI:18257 (9)
CHEBI:17268 (9)
CHEBI:17568 (9)
CHEBI:27897 (9)
CHEBI:17596 (9)
CHEBI:30769 (9)
CHEBI:25094 (8)
CHEBI:18186 (8)
CHEBI:26986 (8)
CHEBI:16811 (8)
CHEBI:28300 (8)
CHEBI:16750 (8)
CHEBI:6650 (8)
CHEBI:28044 (8)
CHEBI:18012 (8)
CHEBI:16027 (8)
CHEBI:16737 (8)
CHEBI:16919 (8)
CHEBI:18066 (7)
CHEBI:15713 (7)
CHEBI:17659 (7)
CHEBI:26271 (7)
CHEBI:17858 (7)
CHEBI:17126 (7)

Metabolite Name

Inosine (10)
Uracil (9)
Taurine (9)
Uridine (9)
Guanosine (8)
Creatinine (8)
Creatine (8)
Kynurenine (7)
Phenylalanine (7)
NADH (7)
Cytidine (7)
L-Tyrosine (7)
Hypoxanthine (7)
Aspartate (6)
NAD+ (6)
AMP (6)
Pyroglutamic acid (6)
Ornithine (6)
Pantothenic acid (6)
Asparagine (6)
Serine (6)
Phosphocreatine (6)
Glycerophosphocholine (6)
UDP-glucose (5)
UTP (5)
CDP-choline (5)
Citrulline (5)
ADP (5)
UMP (5)
Taurocholic acid (5)

First Public Date

2024 (4)
2022 (4)
2021 (3)
2019 (3)
2017 (3)
2020 (2)
2014 (2)
2013 (2)
2025 (1)
2023 (1)

Classification

helminths (3)
viruses (1)

Study type

Transcription profiling by array (1210)
RNA-seq of coding RNA (195)
RNA-seq of coding RNA from single cells (62)
Unknown experiment type (38)
Methylation profiling by array (36)
ChIP-seq (28)
RNA-seq of non coding RNA (24)
Comparative genomic hybridization by array (16)
Other (13)
Genotyping by array (11)
Methylation profiling by high throughput sequencing (11)
Animal - High-throughput sequencing (10)
RNA-seq of total RNA (10)
MicroRNA profiling by array (8)
Transcription profiling by RT-PCR (7)
Transcription profiling by SAGE (6)
Human - High-throughput sequencing (6)
DNA-seq (6)
Spatial transcriptomics by high-throughput sequencing (5)
Baseline (4)
Human - Methylation microarray (4)
Proteomic profiling by array (4)
Human - Two-color microarray (3)
Cell line - High-throughput sequencing (3)
ChIP-chip by array (3)
ATAC-seq (3)
Differential (2)
ChIP-chip by tiling array (2)
Cell line - One-color microarray (2)
Human - One-color microarray (2)

Release Date

2015 (232)
2014 (232)
2013 (212)
2012 (191)
2010 (188)
2011 (177)
2016 (129)
2009 (98)
2008 (94)
2022 (78)
2020 (77)
2018 (77)
2023 (74)
2021 (69)
2017 (67)
2019 (61)
2024 (58)
2007 (55)
2025 (47)
2005 (32)
2006 (29)
2026 (28)
2004 (9)
2003 (7)
2002 (6)
2000 (5)
2001 (4)
1999 (4)

Lab affiliation

Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Universidade Federal de Ouro Preto, Brazil (2)
Laboratory of Parasitology, Institute of Natural Resources and Agrobiology of Salamanca (IRNASA-CSIC), C/Cordel de Merinas 40-52, 37008 Salamanca, Spain (2)
1) Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom 2) Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, United Kingdom (1)
Bioanalytical Research Labs, Department of Biology, University of Salzburg, Austria (1)
Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Ontario, Canada, K1H 8M5 (1)
Department of Internal Medicine I Division of Infectious Diseases Medical University of Vienna, Austria (1)
Department of Internal Medicine I Division of Infectious Diseases, Medical University of Vienna, Austria (1)
Division of Tropical Medicine and Infectious Diseases, Center of Internal Medicine II, Rostock University Medical Center, Rostock, Germany (1)
Guangxi Disease Prevention and Control Center (1)
Head of School, Senior Lecturer, School of Biotechnology, Fundamental and Translational Immunology Group Leader Dublin City University, Dublin 9. Ireland (1)
Hubei University of Technology (1)
Instituto de Química da Universidade de São Paulo Instituto Butantan (1)
Instituto de Salud Carlos III (1)
Parasitology Reference and Research Laboratory, Centro Nacional de Microbiologia, Instituto de Salud Carlos III, Spain (1)
Peking University (1)
Professor of Parasitilogy, Department of Pathobiological Sciences, University of Wisconsin - Madison (1)
Professor. Lab head (1)
Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology (1)

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Comparative proteome analysis of the tegument of male and female adult Schistosoma mansoni

We present a comparative analysis of sex-specific tegument proteins of paired or virgin Schistosoma mansoni. By apply a new and highly sensitive workflow, detection of even low abundance proteins from the worm was achieved Therefore, a streptavidin-biotin affinity purification technique in combinati...

ORGANISM(S): Schistosoma mansoni (Blood fluke)

2022-05-20 | PXD031167 | Pride

Sm29 is a protective surface protein from the tegument of lung-stage Schistosoma mansoni

Schistosomiasis continues to be a significant public health problem1. Although vaccine development against this disease has experienced more failures than successes, encouraging results have recently been obtained using membrane-spanning protein antigens from the tegument of S. mansoni. Our group re...

ORGANISM(S): Schistosoma mansoni

2010-05-15 | E-GEOD-10777 | biostudies-arrayexpress

Ovine gammaherpesvirus 2

ovine herpesvirus 2 Iraq strain partial tegument gene

PRJNA374712 | ENA

Analysis of the glycoproteins present on Fasciola hepatica surface tegument

Fasciola hepatica, commonly known as liver fluke, is a trematode which causes Fasciolosis in ruminants and humans. The outer tegumental coat of F. hepatica is a complex metabolically active biological matrix that is continually exposed to the host immune system. It is highly glycosylated and parasi...

ORGANISM(S): Fasciola hepatica (Liver fluke)

2016-08-03 | PXD003911 | Pride

Fasciola hepatica Glycoproteins Tegument Lectin

A pUL25 dimer interfaces the pseudorabies virus capsid and tegument.

Not available

S-EPMC5718256 | biostudies-literature

The large tegument protein pUL36 is essential for formation of the capsid vertex-specific component at the capsid-tegument interface of herpes simplex virus 1.

Not available

S-EPMC4300765 | biostudies-literature

Organization of capsid-associated tegument components in Kaposi's sarcoma-associated herpesvirus.

Not available

S-EPMC4248902 | biostudies-literature

Atomic force microscopy reveals morphological and mechanical properties of schistosoma mansoni tegument.

Not available

S-EPMC11452522 | biostudies-literature

The incredible bulk: Human cytomegalovirus tegument architectures uncovered by AI-empowered cryo-EM.

Not available

S-EPMC10889378 | biostudies-literature

Stem cells rejuvinate the schistosome host-parasite interface

Schistosomes infect more than 200 million of the world's poorest people. These parasites live in the vasculature, producing eggs that spur a variety of chronic, potentially life-threatening, pathologies exacerbated by the long lifespan of schistosomes, that can thrive in the host for decades. How sc...

ORGANISM(S): Schistosoma mansoni

2015-12-10 | E-GEOD-75861 | biostudies-arrayexpress

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2722 Results

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