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TranscriptomicsMethylation profile of Hepatocellular Carcinoma
DNA methylation profiling of tumor and adjacent non-tumorous tissues of Hepatocellular Carcinoma (HCC) patients. The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs. Samples included 59 tumors and 59 adjacent non-...
ORGANISM(S): Homo sapiens 
2014-12-10 | E-GEOD-57956 | biostudies-arrayexpress
TranscriptomicsExpression profile of Hepatocellular Carcinoma
Expression profiling of tumor and adjacent non-tumorous tissues of Hepatocellular Carcinoma (HCC) patients. Illumina HumanHT-12 V4.0 expression beadchip was used to obtain expression profiles across more than 31,000 annotated genes. Samples included 59 tumors and 59 adjacent non-tumorous samples. To...
ORGANISM(S): Homo sapiens 
2014-12-10 | E-GEOD-57957 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of chromophobe renal cell carcinoma and oncocytoma samples
[original title] Genomic expression and single-nucleotide polymorphism profiling discriminates chromophobe renal cell carcinoma and oncocytoma. Background : Chromophobe renal cell carcinoma (chRCC) and renal oncocytoma are two distinct but closely related entities with strong morphologic and geneti...
ORGANISM(S): Homo sapiens 
2010-07-08 | E-GEOD-19982 | biostudies-arrayexpress
TranscriptomicsSomatic Mutation Screen of Clear Cell RCC
This SuperSeries is composed of the following subset Series: GSE17816: Somatic Mutation Screen of Clear Cell RCC I GSE17818: Somatic Mutation Screen of Clear Cell RCC II Systematic somatic mutation screening of 4000 genes in human clear cell renal cell carcinoma. Information on corresponding somatic...
ORGANISM(S): Homo sapiens 
2010-05-16 | E-GEOD-17895 | biostudies-arrayexpress
Genomicsena-DATASET-DUKE-NUS-15-10-2014-08:01:00:925-302 - samples
Description not provided
EGAD00001001036 | EGA
GenomicsSignatures of Aristolochic Acid Mutagenesis in Bladder Cancer
This study looks at signatures of Aristolochic Acid mutagenesis in bladder cancer, based on exome and whole genome sequencing data. Thirteen bladder tumors and their matched normal DNAs were sequenced on Illumina platforms. Among them eleven were exome sequenced and two were whole genome sequenced.
EGAS00001000975 | EGA
GenomicsDAC for Duke-NUS genomic sequencing projects
Data Access Committee EGAC00001000256
EGAC00001000256 | EGA
GenomicsOrigins and functional consequence of somatic mitochondrial DNA mutations
Recent sequencing studies have extensively explored the somatic alterations present in the nuclear genomes of cancers. Although mitochondria control energy metabolism and apoptosis, the origins and impact of cancer-associated mutations in mitochondrial DNA (mtDNA) are unclear. Here, we analysed soma...
EGAS00001000968 | EGA
Genomicsena-DATASET-SC-16-09-2014-14:22:12:125-153 - samples
Description not provided
EGAD00001001014 | EGA
Genomicsena-DATASET-SC-16-09-2014-14:25:48:324-154 - samples
Description not provided
EGAD00001001015 | EGA
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