Tetrahymena thermophila

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Genomics (187)
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Tetrahymena thermophila (105)
Andropogon gerardi (17)
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Canis lupus familiaris (17)
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Ichthyophthirius multifiliis (3)
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Dictyostelium discoideum (2)
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Naegleria gruberi (2)
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Tetrahymena thermophila CU428 (2)
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Tetrahymena pyriformis (1)

Organisms

Tetrahymena thermophila (100)
Tetrahymena thermophila SB210 (10)
Tetrahymena thermophila CU428 (2)
Ichthyophthirius multifiliis (2)
Tetrahymena (1)
Tetrahymena borealis (1)
Tetrahymena elliotti (1)
Tetrahymena malaccensis (1)
synthetic microbial community (1)
Serratia marcescens (1)

Repository

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geo (82)
biostudies-arrayexpress (29)
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pride (17)
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Disease free (2)
Toxoplasmosis (2)
Giardiasis (1)

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Mass Spectrometry (17)
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Shotgun proteomics (4)
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NextSeq 500 (1)
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2014 (10)
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2018 (8)
2015 (6)
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Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (9)
RNA-seq of non coding RNA (8)
Other (4)
ChIP-seq (4)
RNA-seq of coding RNA (3)
RNA-seq of coding RNA from single cells (1)

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2012 (26)
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Lab affiliation

Universite de Montpellier LPHI UMR5235, France (2)
Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain. (1)
Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas (CIDIE), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET)/Universidad Católica de Córdoba (UCC). Córdoba, Argentina. Facultad de Ciencias de la Salud, Universidad Católica de Córdoba (UCC). Córdoba, Argentina. (1)
Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Department of Anatomy and Cell Biology, McGill University, Canada (1)
Department of Biochemistry, University of Victoria (1)
Department of Chromosome Biology, Max F. Perutz Laboratories, University of Vienna, Vienna BioCenter, Austria (1)
Department of Chromosome Biology, Max Perutz Labs, University of Vienna, 1030 Vienna, Austria (1)
Drug Discovery and Evaluation Unit, Center for Research of Pathogenicity and Virulence of Parasites, BIOCEV, Charles University in Prague (1)
Head of Drug Discovery and Evaluation Center for Research of Pathogenicity and Virulence of Parasites Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Institute of Molecular Biology (IMB) (1)
MOE Key Laboratory of Evolution & Marine Biodiversity and Institute of Evolution & Marine Biodiversity, Ocean University of China (1)
Max Perutz Labs Dept. Chromosome Biology University of Vienna (1)
Proteomic Research Unit (1)
Proteomics & Metabolomics Facility, Center for Open Research Resources & Equipment University of Connecticut Storrs, CT 06269 (1)
Structural Studies Division, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom (1)

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Transcriptome Profile of CYC2 K.O. and WT during meiosis in Tetrahymena thermophila

Meiotic recombination is carried out through a specialized pathway for the formation and repair of DNA double-strand breaks (DSBs) made by the Spo11 protein. The present study shed light on the functional role of Cyclin, CYC2, in Tetrahymena thermophila which has transcriptionally high expression le...

ORGANISM(S): Tetrahymena thermophila

2016-04-06 | E-GEOD-79286 | biostudies-arrayexpress

RNA-seq analysis of Tetrahymena thermophila

We present a comprehensive transcriptome of ciliate T. thermophila using the Illumina RNA-seq platform. The data was generated from the six mRNA samples of growth, starvation and conjugation of Tetrahymena. Despite an AT rich genome, there are about 124.6 million reads mapped to T. thermophila genom...

ORGANISM(S): Tetrahymena thermophila

2012-03-15 | E-GEOD-27971 | biostudies-arrayexpress

Expression changes in Tetrahymena thermophila TRX1 and EZL2 gene knockouts and after hydroxyurea (HU) treatment

12 genome-wide microarrays to investigate the Tetrahymena thermophila gene expression changes in TRX1 and EZL2 gene knockout and hydroxyurea (HU) treatment conditions. For the TRR1 knockout (KO) condition, wild type (WT427) cells and TRX1 KO cells were cultured using 1XSPP, 30 degrees, 100 rpm shaki...

ORGANISM(S): Tetrahymena thermophila

2013-09-04 | E-GEOD-44990 | biostudies-arrayexpress

Genome-Wide gene expression of Tetrahymena thermophila conjugation

Eleven genome wide microarrays containing the predicted coding sequences (putative genes) for the ciliated protozoan Tetrahymena thermophila used to study gene expression in conjugation cells (C-0, C-15m, C-2, C-4, C-6, C-8, C-10, C-12, C-14, C-16, C-18). Combined these eleven microarrays with 50 mi...

ORGANISM(S): Tetrahymena thermophila

2011-06-13 | E-GEOD-26650 | biostudies-arrayexpress

Genome-Wide Microarray Analysis of Gene Expression During Starvation in Tetrahymena thermophila

Two genome-wide microarrays containing the predicted coding sequences (putative genes) for the ciliated protozoan Tetrahymena thermophila were used to study gene expression in starved cells (starvation 0 hour and starvation 24 hour). Combining these two microarrays with 50 microarrays described in M...

ORGANISM(S): Tetrahymena thermophila

2011-06-13 | E-GEOD-26384 | biostudies-arrayexpress

Genome-Wide Microarray Analysis of Gene Expression During Starvation in Tetrahymena thermophila

Four genome wide microarrays containing the predicted coding sequences (putative genes) for the ciliated protozoan Tetrahymena thermophila used to study gene expression in starved cells (Starvation 0 hour and Starvation 9 hour, each two replicates). Combined these four microarrays with 50 microarray...

ORGANISM(S): Tetrahymena thermophila

2011-06-13 | E-GEOD-26385 | biostudies-arrayexpress

Sequence, Biogenesis, and Function of Diverse sRNA Classes Bound to the Piwi-family Proteins of Tetrahymena thermophila

PAZ/PIWI-domain (PPD) proteins carrying small RNAs (sRNAs) function in gene and genome regulation. The ciliate Tetrahymena thermophila encodes numerous PPD proteins exclusively of the Piwi clade. We show that the three Tetrahymena Piwi-family proteins (Twis) preferentially expressed in growing cells...

ORGANISM(S): Tetrahymena thermophila

2009-11-23 | E-GEOD-17006 | biostudies-arrayexpress

Characterization of the CORVET complexes of Tetrahymena thermophila

In endolysosomal networks, two hetero-hexameric tethers called HOPS and CORVET are found widely throughout eukaryotes. The ciliate Tetrahymena thermophila is a unicellular organism with elaborate endolysosomal pathways. Curiously, Tetrahymena and related protozoa have lost HOPS. Tetrahymena encodes ...

ORGANISM(S): Tetrahymena thermophila CU428

2019-12-19 | PXD014895 | Pride

Genome-Wide Microarray Analysis of Histone H2B Ubiquitylation mutant strains of Tetrahymena thermophila

Microarray analyses were performed to compare the gene expression profiles of wild-type and several mutant strains of the ciliated protozoan Tetrahymena thermophila. Elimination of H3K4 methylation (hht2-K4Q) and knockout of either of the ubiquitylation enzymes (delta-UBC2 and delta-BRE1) affects a ...

ORGANISM(S): Tetrahymena thermophila

2010-06-20 | E-GEOD-18743 | biostudies-arrayexpress

Tetrahymena thermophila

Tetrahymena thermophila Raw sequence reads

PRJNA611686 | ENA

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