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ProteomicsAssociation of proteomics changes with Al-sensitive root zones in switchgrass
In this project, we report on aluminum (Al)-induced root proteomic changes in switchgrass. After growth in a hydroponic culture system supplemented with 400μM of Al, plants began to show signs of physiological stress such as a reduction in photosynthetic rate. At this time, the basal 2‐cm long root ...
ORGANISM(S): Panicum virgatum (Switchgrass) 
2018-03-23 | PXD008882 | Pride
Tmt-quantitative proteomics  protein sumoylation  protein folding 
ProteomicsAssociation of proteomics changes with Al-sensitive root zones in switchgrass, part 2
In this project, we report on aluminum (Al)-induced root proteomic changes in switchgrass. After growth in a hydroponic culture system supplemented with 400μM of Al, plants began to show signs of physiological stress such as a reduction in photosynthetic rate. At this time, the basal 2‐cm long root ...
ORGANISM(S): Pisum sativum (Garden pea) 
2018-03-19 | PXD009125 | Pride
Tmt-quantitative proteomics  protein sumoylation  protein folding 
ProteomicsCo-utilization of sugar and aromatic carbons in Pseudomonas putida
Pseudomonas species thrive in different nutritional environments and can catabolize divergent carbon substrates. These capabilities have important implications for the role of these species in natural and engineered carbon processing. However, the metabolic phenotypes enabling Pseudomonas to utilize...
ORGANISM(S): Pseudomonas putida 
2021-09-08 | PXD013605 | Pride
Mixed-carbon metabolism Proteomics Metabolomics Benzoate Metabolic flux Pseudomonas Glucose Bacterial metabolism Fluxomics Metabolic regulation 
ProteomicsAluminum and salt induced protein changes in tomato plants transformed with bar gene
In this project, seedlings of tomato (Solanum lycopersicum) ‘Money Maker’ plants transformed with a bar gene were treated under 20 µM Al3+ and salt (200 mM NaCl) for two weeks. The treatments were conducted in hydroponic solutions in a greenhouse at 24±2C without supplemental light. Roots harvested...
ORGANISM(S): Solanum lycopersicum 
2020-04-09 | PXD009848 | Pride
Aluminum Root Salt 
ProteomicsAluminum and salt induced protein changes in tomato overexpressing a glyoxalase I gene
In this project, seedlings of tomato (Solanum lycopersicum) ‘Money Maker’ plants overexpressing a glyoxalase I gene were treated under 20 µM Al3+ and salt (200 mM NaCl) for two weeks. The treatments were conducted in hydroponic solutions in a greenhouse at 24±2C without supplemental light. Roots ha...
ORGANISM(S): Solanum lycopersicum 
2020-04-09 | PXD009456 | Pride
Aluminum Root Methylglyoxal Salt 
ProteomicsAl-induced root proteomics changes in stress-acclimated tomato plants
Excess levels of Al3+ become highly harmful to plant roots as the toxic ions bind to the surface of root-tips. Plants can acquire tolerance to stress after multiple generations of exposure to stress conditions. After four consecutive generations of Al treatments (G4Al+ seeds), tomato plants appeare...
ORGANISM(S): Solanum lycopersicum 
2022-02-14 | PXD018234 | Pride
Stress-acclimated tomato plants Tmt proteomics Laser capture microdissection Aluminum toxicity Outer cellular layers of root-tips 
ProteomicsHeat stress induced proteomes in tomato pollen mother cells and microspores
During the reproductive stage, tomatoes require nighttime temperatures below 21°C and daytime temperatures below 32°C for healthy flower development and fruit set. Prolonged exposure to temperatures above the optimal range can cause abnormalities in pollen development, leading to reduced fertility o...
ORGANISM(S): Solanum lycopersicum 
2025-05-07 | PXD060801 | Pride
Laser capture microdissection Pollen heat stress Tmt proteomics Tomato free microspores 
ProteomicsLCM-quantitative proteomics analysis of Al-sensitive tomato root cells
Aluminum toxicity in acid soil is a major stress to plant growth. The primary target is in root-tips where the epidermal and outer cortex layers of cells in the root transition zone area are more sensitive to the toxic ions. This project used laser capture microdissection (LCM) technology to isolat...
ORGANISM(S): Bemisia sp. Unknown_Th_13_12_S.lycopersicum 
2019-11-07 | PXD010459 | Pride
Tmt proteomics Laser capture microdissection Root al-sensitive cell proteomics 
Proteomics(TMT)-quantitative proteomic study of Bacillus cereus tsu1
In this project, we report the bacterial proteome expression profile change for different time points when culturing in rapeseed cake substrate (RCS). Bacillus cereus tsu1 was cultured in RCS (25g/L) for 12 hours, 24 hours and 48 hours. At each time point, cells were stained with Sudan Black to moni...
ORGANISM(S): Bacillus cereus 
2021-09-08 | PXD009960 | Pride
Phb pathway proteins Tmt-quantitative proteomics  protein profile of bacillus cereus tsu1 
ProteomicsProteomics studies of outer and inner cellular layers of tomato root-tips for Al stress
Excess levels of Al3+ become highly harmful to plant roots. The epidermal and outer cortical layers of root-tips experience more severe damages than the inner tissues from Al toxicity. This project used laser capture microdissection (LCM) technology to isolate the outer and inner cell layers of cel...
ORGANISM(S): Solanum lycopersicum 
2022-02-14 | PXD021994 | Pride
Tmt proteomics Laser capture microdissection Aluminum toxicity Outer and inner cellular layers of root-tips 
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