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MetabolomicsComprehensive lipid analysis of green Arabica coffee beans by LC-HRMS/MS
Lipids play an important role in coffee bean development, coffee brew and in the effects of coffee on human health. They account for around 17% of the dry bean weight and encompass different classes and subclasses, mostly triacylglycerols (TAG) and a minor quantity of phospholipids (PL) and βN-alkan...
2021-11-19 | MTBLS1972 | MetaboLights
MetabolomicsHabitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-04-07 | MTBLS13494 | MetaboLights
MetabolomicsHabitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition: double-blind, randomised, parallel design

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-03-26 | MTBLS13401 | MetaboLights
TranscriptomicsDawn anticipation
To investigate the role of TIC in the morning perception process, we performed a transcriptome analysis of the wild type and time for coffee mutant (tic-2) at dawn. An additional file is included. In this file, the expression values for the replicates are condensed in a single data point obtaining o...
ORGANISM(S): Arabidopsis thaliana 
2013-10-10 | E-MTAB-1362 | biostudies-arrayexpress
ProteomicsSeed comparative genomics in three coffee species evidence desiccation tolerance mechanisms among intermediate seeds
In contrast to the desiccation tolerant (DT) ‘orthodox’ seeds, the so-called ‘intermediate’ seeds cannot survive complete drying and are short-lived. All species of the genus Coffea produce intermediate seeds but show a considerable variability for the seed DT level, which may help to decipher the m...
ORGANISM(S): Coffea canephora Coffea arabica (Arabian coffee) Coffea eugenioides 
2020-05-26 | PXD015806 | Pride
Dehydration Transcriptome. Intermediate seeds Respiration Coffea Late maturation Desiccation tolerance Metabolic quiescence Seed development 
UnknownDevelopment of Fermentation Strategies for Quality Mild Coffee Production (<i>Coffea arabica</i> L.) Based on Oxygen Availability and Processing Time.
Not available
S-EPMC12427761 | biostudies-literature
ProteomicsProteomics coupled machine learning—innovative approach in geographical origin authentication of green Coffea arabica
The geographical authentication of green specialty coffee is an intriguing phenomenon that is not yet fully resolved. As one of few, this study is focused on the authentication of the geographical origin of green specialty coffee beans from well-known harvesting regions in Central America, South Ame...
ORGANISM(S): Coffea arabica (Arabian coffee) 
2025-10-09 | PXD059982 | Pride
Green coffee Linear discriminant analysis Cross-validation Proteome profiling 
UnknownSensory analysis of the flavor profile of full immersion hot, room temperature, and cold brewed coffee over time.
Not available
S-EPMC11335879 | biostudies-literature
ProteomicsProteome profile of coffee embryogenic cell suspensions
Coffee is one of the most important commodities cultivated worldwide and has great economic impact in producing countries. Although 130 different species belonging to the coffea gender have been described, only two of them are commercially exploited: Coffea arabica and Coffea canephora. C. arabica i...
ORGANISM(S): Coffea arabica (Arabian coffee) 
2016-02-03 | PXD002963 | Pride
Coffea arabica Totipotency Gel free proteomics Somatic embryogenesis 
ProteomicsEndodermis-specific Receptor-like Kinase (ERK1) is required for the deposition of lignin in the Casparian strip in the root
The Casparian strip constitutes a physical diffusion barrier formed by the polar deposition of lignin in the root endodermis. The polar deposition of lignin is thought to be mediated by the scaffolding activity of membrane bound Casparian Strip domain proteins (CASPs) and the dirigent domain-contain...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-09-08 | PXD013861 | Pride
Arabidopsis Endodermis Time for coffee Erk1 Phosphorylation Root 
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