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TranscriptomicsIn Vivo Mapping of Arabidopsis Scaffold/Matrix Attachment Regions Reveals Link to Nucleosome-Disfavoring Poly(dA:dT) Tracts
Scaffold or matrix attachment regions (S/MARs) are found in all eukaryotes. The pattern of distribution and genomic context of S/MARs is thought to be important for processes such as chromatin organization and modulation of gene expression. Despite the importance of such processes, much is unknown a...
ORGANISM(S): Arabidopsis thaliana 
2014-02-03 | E-GEOD-45549 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human fibroblasts grown in petri dishes vs. attached to a tissue engineering scaffold sampled at 7 timepoints.
A goal of tissue engineering is to produce a scaffold material that will guide cells to differentiate and regenerate functional replacement tissue at the site of injury. Little is known about how cells respond on a molecular level to tissue engineering scaffold materials. In this work we used oligon...
ORGANISM(S): Homo sapiens 
2007-10-26 | E-GEOD-6432 | biostudies-arrayexpress
TranscriptomicsTranscription profiling time series of the growth of human IMR-90 cells seeded on a collagen/chondroitin sulfate tissue engineering scaffold
A series of chips with some repeated measurments. Each chip represents a pool of 4 collagen/chondroitin sulfate tissue engineering scaffold meshes seeded with 1 x 10^6 IMR-90 Human Fibroblasts. mRNA was isolated at 30 minutes, 1, 2, 4, 8, 12, 24, 48, and 72 hours after seeding.
ORGANISM(S): Homo sapiens 
2007-12-13 | E-GEOD-409 | biostudies-arrayexpress
ProteomicsProteomics of tissue matrix scaffold derived from decellularized mice mammary tissues, LC-MS/MS
This project is intended to identify the compositions of the tissue matrix scaffold (TMS) generated from the extracellular matrix (ECM) of decellularized NON-SCID mice breast tissues (DBT). Since ECM is the physicochemical support for the cells living in the tissue microenvironment, it is important ...
ORGANISM(S): Mus musculus (Mouse) 
2018-10-26 | PXD005697 | Pride
Ecm Breast/mammary tissue Tissue matrix scaffold Tms Decellularization Lc-ms/ms 
TranscriptomicsTranscription profiling of human fibroblast IMR-90 cells tissue culture polystyrene time series
IMR-90 Human Fibroblasts were seeded onto TCPS dishes. mRNA was isolated at 1, 2, 4, 8, 12, 24, 48 and 96 hours. This time course was used as a control for gene expression studies on collagen/chondroitin sulfate tissue engineering scaffold materials using the same cell line.
ORGANISM(S): Homo sapiens 
2008-06-12 | E-GEOD-410 | biostudies-arrayexpress
OtherQuantification of Extracellular Matrix Proteins from a Rat Lung Scaffold to Provide a Molecular Readout for Tissue Engineering.
Data from ProteomeXchange, PXD ID: PXD001213. File: 20121108_Native_Frac3_Lung01_Run03.mzml. Published as part of . From the Abstract: {{i}} ... To support organ engineering efforts, we developed a targeted proteomics method to extract and quantify extracellular matrix components from tissues. Our ...
ORGANISM(S): Rat 
GPM32310006954 | GPMDB
Resource Reanalysis 
ProteomicsHuman testicular matrix
ITo derive a scaffold from human testis for the purpose of tissue engineering and regenerative medicine, we developed a method to produce a cytocompatible decellularized testicular matrix (DTM) while maintaining the native tissue-specific characteristics and components. The potential benefits of tis...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-03-14 | MSV000079582 | MassIVE
ProteomicsPorcine breast extracellular matrix hydrogel for spatial tissue culture
Porcine mammary fatty tissues represent an abundant source of biomaterial for generation of breast-specific extracellular matrix (ECM). Here we report the extraction of total ECM proteins from pig breast fatty tissues, the fabrication of hydrogel scaffolds from the extracted ECM proteins, the struct...
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2019-11-12 | PXD010960 | Pride
Breast cancer Ecm Hydrogel Scaffold Porcine 3d culture 
ProteomicsHuman testicular matrix - Derivation and characterization of a cytocompatible scaffold from human testis
ITo derive a scaffold from human testis for the purpose of tissue engineering and regenerative medicine, we developed a method to produce a cytocompatible decellularized testicular matrix (DTM) while maintaining the native tissue-specific characteristics and components. The potential benefits of tis...
ORGANISM(S): Homo sapiens (Human) 
2015-01-30 | PXD001524 | Pride
Testicular structure Extracellular matrix 3d cell culture 
UnknownMechanically Reinforced Extracellular Matrix Scaffold for Application of Cartilage Tissue Engineering.
Not available
S-EPMC6171674 | biostudies-literature
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