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MetabolomicsInvestigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer (training set)
Not available
ORGANISM(S): Homo sapiens 
ST000385 | MetabolomicsWorkbench
MetabolomicsSerum Metabolomic Profiling Reveals Load-Specific Adaptations to Resistance Training
This study deposits the untargeted ¹H-NMR serum metabolomics dataset of a parallel-group, longitudinal resistance training intervention designed to identify load-specific and training-status-specific metabolomic signatures in healthy young men. Seventeen healthy young men (age 24 ± 3 yr; height 173 ...
2026-07-20 | MTBLS15091 | MetaboLights
TranscriptomicsTranscription profiling of soleus muscle from lean and obese Zucker rats following exercise training
Endurance exercise training has been shown to decrease whole-body and skeletal muscle insulin resistance and increase glucose tolerance in conditions of both pre-diabetes and overt type 2 diabetes. However, the adaptive responses in skeletal muscle at the molecular and genetic level for these benef...
ORGANISM(S): Rattus norvegicus 
2009-11-16 | E-TABM-213 | biostudies-arrayexpress
ProteomicsRNA oligomers training set for the Pytheas scoring function
Mass spectrometry remains an important method for analysis of modified nucleosides ubiquitously present in cellular RNAs, in particular for ribosomal and transfer RNAs that play crucial roles in mRNA translation and decoding. Furthermore, modifications have effect on the lifetimes of nucleic acids i...
ORGANISM(S): Escherichia coli 
2022-05-04 | PXD030435 | Pride
Training set Scoring function Rna Pytheas 
TranscriptomicsThe Heritage (HEalth, RIsk factors, exercise Training And GEnetics) family study
The overall objective of the heritage project is to study the role of the genotype in cardiovascular,metabolic and hormonal responses to aerobic exercise training and the contribution of regular exercise to changes in several cardiovascular disease and diabetes risk factors. The study cohort in this...
ORGANISM(S): Homo sapiens 
2013-06-12 | E-GEOD-47874 | biostudies-arrayexpress
TranscriptomicsE-Predict Training Data Set and Examples
This series includes a 32-array training dataset used to evaluate E-Predict normalization and similarity metric parameters as well as 13 microarrays used as examples in (Urisman, et. al 2005). Training data set includes 15 independent HeLa RNAhybridizations (microarrays 1-15), 10 independent nasal l...
ORGANISM(S): Viruses 
2010-06-10 | E-GEOD-2228 | biostudies-arrayexpress
TranscriptomicsSEQC Toxicogenomics Study: RNA-Seq data set
The comparative advantages of RNA-Seq and microarrays in transcriptome profiling were evaluated in the context of a comprehensive study design. Gene expression data from Illumina RNA-Seq and Affymetrix microarrays were obtained from livers of rats exposed to 27 agents that comprised of seven modes o...
ORGANISM(S): Rattus norvegicus 
2014-08-08 | E-GEOD-55347 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse time series of diabetes and exercise training induced expression changes in skeletal muscle
Experiment protocol: Experiment was performed on 10 to 15 weeks old male NMRI mice (Harlan, Holland) housed in standard conditions (temperature 22°C, humidity 60 ± 10 %, artificial light from 8.00 am to 8.00 pm, normally 5 animals per cage). Animals had free access to tap water and food pellets (R36...
ORGANISM(S): Mus musculus 
2007-10-24 | E-GEOD-1659 | biostudies-arrayexpress
ProteomicsDDA-BERT: end-to-end training for data-dependent acquisition mass spectrometry-based proteomics
This project provides a large-scale training dataset for DDA-BERT, an end-to-end transformer-based deep learning model developed for PSM rescoring in data-dependent acquisition (DDA) proteomics. The dataset comprises curated PSMs generated using established database search engines, including FragPip...
ORGANISM(S): Chlamydomonas reinhardtii Glycine max Arabidopsis thaliana (Mouse-ear cress) Homo sapiens (Human) Mus musculus (Mouse) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) Caenorhabditis elegans Rattus norvegicus (Rat) Bacillus cereus Bacillus subtilis 
2026-08-24 | PXD072999 | Pride
Deep learning Dda proteomics Peptide-spectrum matches (psms) rescoring Dda-bert Peptide identification 
TranscriptomicsVastus lateralis biopsies from healthy and COPD patients before and after 8 weeks of exercise training
Study the training exercise effects in chronic obstructive pulmonary disease (COPD) patients and aged-matched healthy individuals. Skeletal muscle biopsies from 9 stable COPD patients with normal fat free mass index (FFMI, 21Kg/m2) (COPDN), 6 COPD patients with low FFMI (16Kg/m2) (COPL), and 12 hea...
ORGANISM(S): Homo sapiens 
2013-11-16 | E-GEOD-27536 | biostudies-arrayexpress
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