Triplicate - OmicsDI

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Genomics (6935)
Transcriptomics (3354)
Proteomics (1986)
Unknown (1056)
Metabolomics (154)
Other (24)
Methylation profiling (8)
Genomic (3)
Multiomics (2)

Organisms

Homo sapiens (1275)
Mus musculus (854)
Drosophila melanogaster (172)
Arabidopsis thaliana (153)
Saccharomyces cerevisiae (112)
Rattus norvegicus (86)
Danio rerio (58)
Caenorhabditis elegans (33)
Escherichia coli (30)
Sus scrofa (25)
Gallus gallus (24)
Staphylococcus aureus (17)
Pseudomonas aeruginosa PAO1 (17)
Candida albicans (17)
Pseudomonas aeruginosa (15)
Mycobacterium tuberculosis (14)
Bos taurus (14)
Zea mays (12)
Vitis vinifera (12)
Escherichia coli K-12 (12)
Salmo salar (11)
Escherichia coli str. K-12 substr. MG1655 (10)
Streptococcus pyogenes (10)
Daphnia magna (9)
Yersinia pestis (7)
Xenopus laevis (7)
Mycobacterium tuberculosis H37Rv (7)
Bacillus subtilis (6)
Salmonella enterica subsp. enterica serovar Typhimurium (6)
Solanum lycopersicum (6)

Organisms

Homo sapiens (2319)
Mus musculus (1757)
Arabidopsis thaliana (197)
Saccharomyces cerevisiae (171)
Drosophila melanogaster (136)
Rattus norvegicus (112)
Caenorhabditis elegans (92)
Danio rerio (89)
Sus scrofa (42)
Escherichia coli (37)
Gallus gallus (36)
Candida albicans (25)
Zea mays (25)
Pseudomonas aeruginosa (22)
Staphylococcus aureus (18)
Oryza sativa (18)
Solanum lycopersicum (16)
Mycobacterium tuberculosis (14)
Pseudomonas aeruginosa PAO1 (13)
Bos taurus (13)
Plasmodium falciparum (13)
Xenopus laevis (12)
Escherichia coli str. K-12 substr. MG1655 (12)
Bacillus subtilis (12)
Mycolicibacterium smegmatis (11)
Vitis vinifera (11)
Schizosaccharomyces pombe (9)
Streptococcus pyogenes (9)
Oryza sativa Japonica Group (9)
Caulobacter vibrioides (8)

Repository

ENA (6782)
biostudies-arrayexpress (2521)
pride (1832)
geo (1007)
MetaboLights (133)
MassIVE (67)
jPOST (40)
GNPS (21)
EGA (19)
PeptideAtlas (14)
iProX (13)
GPMDB (6)
NODE (5)
dbGaP (3)
PanoramaPublic (3)
LINCS (1)
PAXDB (1)

Tissue

Cell culture (439)
Epithelial cell (98)
Permanent cell line cell (72)
Brain (57)
Blood (39)
Plant cell (38)
Blood plasma (37)
Cell suspension culture (37)
Blood cell (35)
Liver (35)
Macrophage (32)
Fibroblast (30)
Kidney (28)
Whole body (28)
Blood serum (24)
Leaf (24)
Embryonic stem cell (23)
Lung (23)
T cell (22)
B cell (21)
Colon (20)
Heart (17)
Stem cell (17)
HeLa cell (16)
Embryo (15)
Testis (15)
Bone marrow (14)
Spleen (14)
Others (12)
Marrow (1)

Disease

Breast cancer (41)
Disease free (41)
Colon cancer (26)
Acute leukemia (17)
Cervix carcinoma (15)
Malignant neoplasm of ovary (15)
Parkinson's disease (10)
Prostate cancer (9)
Trypanosomiasis (9)
Lymphoma (8)
Cardiovascular system disease (7)
Prostate adenocarcinoma (7)
Not Available (6)
Alzheimer's disease (6)
Brain glioblastoma multiforme (6)
Infertility (6)
Normal (3)
Breast carcinoma (2)
Cataract (1)
Large cell neuroendocrine carcinoma (1)
Colorectal Carcinoma (1)
Choriocarcinoma (1)
T-cell acute lymphoblastic leukemia (1)
Cystic fibrosis (1)
Infected with Leishmania amazonensis (1)
Renal cell carcinoma (1)
Acute promyelocytic leukemia (1)
Glioblastoma (1)
Adenocarcinoma (1)
Multiple myeloma (1)

Technology Type

Mass Spectrometry (1832)
Shotgun proteomics (970)
Bottom-up proteomics (343)
Affinity purification coupled with mass spectrometry proteomics (205)
Data-dependent acquisition (191)
Mass spectrometry (116)
Gel-based experiment (96)
SWATH MS (81)
Data-independent acquisition (78)
Top-down proteomics (62)
Chemical cross-linking coupled with mass spectrometry proteomics (57)
HDMSE (53)
MSE (50)
SRM/MRM (30)
Mass spectrometry assay (15)
All-ion fragmentation (12)
DiaPASEF (7)
Affinity proteomics (5)
Mass spectrometry imaging (5)
Proteogenomics (3)
NMR spectroscopy (2)
Glycoproteomics (2)
SNP6, ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
AB SOLiD 4 System (1)
Illumina HiSeq 2000 (1)
Fluorescence imaging (1)
Fluorescence intensity (1)
Immunopeptidomics (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2000 (37)
Illumina NovaSeq 6000 (34)
NextSeq 500 (34)
Illumina HiSeq 2500 (16)
Illumina HiSeq 4000 (16)
Illumina MiSeq (13)
NextSeq 550 (10)
Illumina HiSeq 1500 (9)
Illumina NovaSeq X (8)
Illumina Genome Analyzer IIx (5)
Illumina Genome Analyzer II (4)
Vortex (4)
N/a (3)
NextSeq 2000 (3)
G2565CA DNA microarray scanner (Agilent) for scanning. (2)
Chamber type: SureHyb hybridization chamber (Agilent). (2)
AB SOLiD 4 System (2)
ArrayWoRx Biochip Reader [Applied Precision] (2)
GenePix 4000B [Axon Instruments] (2)
Scanning hardware (2)
None (2)
DNBSEQ-G400 (2)
Maxwell RSC Instrument (1)
Nanodrop (1)
QSonica Q800R (1)
DNBSEQ Eukaryotic Stranded Transcriptome library preparation- Stranded mRNA Library (1)
10X chemistry 3' v3 (1)
Agilent 2100 Bioanalyzer (Agilent Technologies); Qubit Fluorometer (Thermo Fisher Scientific); standard electrophoresis system (1)
NanoDrop spectrophotometer, Agilent 2100 Bioanalyzer (1)
Illumina Nova Seq (1)

Publication Date

2021 (385)
2010 (353)
2015 (351)
2022 (340)
2014 (334)
2013 (332)
2023 (316)
2016 (315)
2020 (308)
2025 (302)
2011 (287)
2012 (284)
2026 (275)
2019 (269)
2024 (259)
2018 (217)
2009 (200)
2008 (180)
2017 (154)
2007 (92)
2005 (30)
2006 (28)
2004 (24)
2003 (2)
2002 (1)

UNIPROT ID/AC

1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433S_MOUSE (1)
1433T_MOUSE (1)
1433Z_MOUSE (1)
1A1L1_MOUSE (1)
2A5A_MOUSE (1)
2A5B_MOUSE (1)
2A5E_MOUSE (1)
2A5G_MOUSE (1)
2AAA_MOUSE (1)
2AAB_MOUSE (1)
2ABA_MOUSE (1)
2ABB_MOUSE (1)
2ABD_MOUSE (1)
2ABG_MOUSE (1)
3BHS7_MOUSE (1)
3BP1_MOUSE (1)
3BP2_MOUSE (1)
3BP5L_MOUSE (1)
3BP5_MOUSE (1)
3HIDH_MOUSE (1)
3MG_MOUSE (1)
41_MOUSE (1)
4EBP2_MOUSE (1)
4ET_MOUSE (1)
4F2_MOUSE (1)
5HT2A_MOUSE (1)

ENSEMBL ID

ENSG00000247315 (10)
ENSG00000170477 (4)
ENSG00000204131 (2)
ENSG00000147251 (1)

CHEBI ID

CHEBI:30769 (28)
CHEBI:17596 (27)
CHEBI:16708 (26)
CHEBI:6650 (25)
CHEBI:28044 (24)
CHEBI:15741 (24)
CHEBI:16865 (23)
CHEBI:16335 (23)
CHEBI:27897 (23)
CHEBI:18186 (22)
CHEBI:16811 (22)
CHEBI:16704 (22)
CHEBI:17568 (22)
CHEBI:18012 (22)
CHEBI:17822 (21)
CHEBI:22660 (21)
CHEBI:28300 (21)
CHEBI:24898 (21)
CHEBI:30915 (21)
CHEBI:17368 (21)
CHEBI:26271 (20)
CHEBI:25017 (20)
CHEBI:29016 (20)
CHEBI:15891 (20)
CHEBI:18257 (20)
CHEBI:15428 (20)
CHEBI:16449 (20)
CHEBI:16027 (20)
CHEBI:27266 (19)
CHEBI:17148 (19)

Metabolite Name

Adenine (13)
Inosine (12)
Threonine (12)
Proline (11)
Adenine (11)
Xanthine (11)
Phenylalanine (11)
Uracil (11)
Xanthosine (10)
Uridine (10)
Tryptophan (10)
Guanosine (10)
Tyrosine (10)
Alanine (10)
Adenosine (10)
Inosine (10)
Hypoxanthine (10)
Leucine (9)
Taurine (9)
Citrulline (9)
Methionine (9)
Glutamine (9)
Ornithine (9)
Valine (9)
Isoleucine (9)
Leucine (9)
Spermidine (9)
Valine (9)
Pyroglutamic acid (9)
Putrescine (9)

First Public Date

2014 (1329)
2020 (701)
2019 (647)
2021 (556)
2024 (516)
2023 (483)
2022 (470)
2017 (450)
2018 (436)
2025 (372)
2015 (297)
2016 (226)
2026 (224)
2013 (75)

Classification

bacteria (322)
fungi (67)
protozoa (29)
helminths (3)
viruses (3)

Modification

4-tetrahydrothiazine-3-carboxylic acid (5)
15.994915 (4)
57.021464 (3)
Not available (3)
2x(15)N labeled L-lysine (2)
42.010565 (2)
4x(15)N labeled L-arginine (2)
6x(2)H labeled dimethylated L-arginine (2)
N6 (2)
-17.026549 (1)
-18.010565 (1)
0.984016 (1)
4'-dihydroxyphenylalanine (1)
4x(2)H labeled dimethylated residue (1)
Heavy form - site K (1)
Light form - site K (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (1689)
RNA-seq of coding RNA (395)
Comparative genomic hybridization by array (53)
ChIP-seq (46)
Other (40)
Transcription profiling by tiling array (39)
Unknown experiment type (35)
ChIP-chip by tiling array (25)
RNA-seq of non coding RNA (23)
ChIP-chip by array (22)
Transcription profiling by RT-PCR (21)
Methylation profiling by array (19)
Proteomic profiling by array (17)
MicroRNA profiling by array (12)
RNA-seq of total RNA (11)
High-throughput sequencing (10)
Methylation profiling by high throughput sequencing (9)
Cell line - High-throughput sequencing (6)
One-color microarray (4)
Animal - High-throughput sequencing (4)
DNA-seq (4)
Human - High-throughput sequencing (3)
Genotyping by array (3)
RIP-seq (3)
Transcription profiling by SAGE (2)
Baseline (2)
Plant - High-throughput sequencing (2)
Cell line - One-color microarray (2)
CLIP-seq (2)
Antigen profiling (2)

Release Date

2010 (338)
2016 (337)
2013 (327)
2015 (320)
2014 (320)
2012 (294)
2011 (280)
2008 (174)
2021 (148)
2023 (128)
2009 (127)
2025 (110)
2022 (108)
2020 (106)
2024 (80)
2019 (78)
2018 (75)
2017 (75)
2007 (62)
2026 (38)
2006 (19)
2005 (13)
2004 (12)
2003 (2)
1999 (2)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (47)
University of Victoria (41)
Forest Products Laboratory, Institute for Microbial and Biochemical Sciences, USDA (6)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology / Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (6)
North Carolina State University (6)
University of Washington (6)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (5)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (5)
Florida State University (5)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (5)
Institute for Systems Biology (5)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (5)
Michigan State University (5)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (4)
College of Life Sciences, South-Central University for Nationalities (4)
Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom (4)
Federal University of Goias (4)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (4)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (4)
Lomonosov Moscow State University (4)
School of Life Sciences, The Chinese University of Hong Kong (4)
Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE (4)
Univ. Bordeaux, Bordeaux Proteome, Bordeaux, France. (4)
University of Washington Department of Genome Sciences (4)
Wageningen University (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02215, USA (3)
Department of Cell Biology, Harvard Medical School, Boston MA, USA (3)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (3)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (3)
GSK (3)

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Triplicate WGS

Quality assessment of triplicate whole genome sequencing

PRJEB42832 | ENA

Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.

Not available

S-EPMC7030937 | biostudies-literature

A custom ddPCR method for the detection of copy number variations in the nebulin triplicate region.

Not available

S-EPMC9109913 | biostudies-literature

Triplicate Dynamic Cell Culture Platform for Enhanced Reproducibility in Anti-Cancer Drug Testing.

Not available

S-EPMC11815626 | biostudies-literature

Longitudinal analysis of HIV-1 coreceptor tropism by single and triplicate HIV-1 RNA and DNA sequencing in patients undergoing successful first-line antiretroviral therapy.

Not available

S-EPMC3954119 | biostudies-literature

Complete Genome Sequence of Pseudomonas chlororaphis subsp. aurantiaca Reveals a Triplicate Quorum-Sensing Mechanism for Regulation of Phenazine Production.

Not available

S-EPMC5371074 | biostudies-literature

A recurrent copy number variation of the NEB triplicate region: only revealed by the targeted nemaline myopathy CGH array.

Not available

S-EPMC4929883 | biostudies-literature

Transcriptome of yw fly, L(3)mbt mutant fly and Lint-O mutant fly were performed in triplicate in Drosophila melanogaster

PRJNA846302 | ENA

Use of a modified Multiplexed Inhibitor Bead assay to study kinome responses to cytostatic treatment in human cancer cell lines Triplicate Test: pilot study

In order to improve elution of proteins from the column, to reduce the cost as well as the hands on time of the analysis, we here present a modification of the Multiplexed Inhibitor Bead assay (MIB assay), where we elute the proteins from beads containing covalently bound inhibitors using trypsin di...

ORGANISM(S): Homo sapiens (Human)

2017-02-13 | PXD005402 | Pride

Ms Test Triplicate

Replication timing analysis of Recql4 -/- Klhdc3 -/- vs control using TIGER on whole genome sequencing in triplicate

PRJNA1137410 | ENA

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13523 Results

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