Turnip - OmicsDI

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Unknown (414)
Genomics (123)
Transcriptomics (120)
Proteomics (17)
Metabolomics (10)

Organisms

Arabidopsis thaliana (48)
Brassica napus (45)
Brassica rapa (12)
Turnip mosaic virus (4)
Brassica rapa subsp. pekinensis (3)
Myzus persicae (2)
Brassica rapa subsp. chinensis (2)
Brassica juncea (2)
Melon necrotic spot virus (2)
Brassica rapa subsp. rapa (2)
Rattus norvegicus (2)
Mus musculus (2)
Moringa oleifera (1)
Brassica carinata x Brassica rapa (1)
Brassica oleracea (1)
Allium cepa (1)
Agrotis ipsilon (1)
Agrotis segetum (1)
Gossypium hirsutum (1)
Brassica oleracea var. alboglabra (1)
Brassica nigra (1)
Hordeum vulgare (1)
Brassica oleracea var. italica (1)
Watermelon mosaic virus (1)
Tobacco rattle virus (1)
Pepper mild mottle virus (1)
Cymbidium ringspot virus (1)
Tomato yellow leaf curl virus (1)
Potato virus X (1)
cucumber mosaic cucumovirus (1)

Organisms

Arabidopsis thaliana (15)
Brassica rapa (12)
Brassica rapa subsp. rapa (10)
Athalia rosae (6)
Turnip mosaic virus (3)
Arabidopsis halleri subsp. gemmifera (3)
Turnip yellow mosaic virus (2)
Brassica rapa var. rapa (2)
Nicotiana benthamiana (2)
Brassica napus (2)
Turnip crinkle virus satellite RNA (1)
Turnip crinkle virus (1)
Meloidogyne artiellia (1)
Agrotis segetum (1)
Lipaphis erysimi (1)
Pseudomonas putida (1)
Limosilactobacillus fermentum (1)
Brassica rapa subsp. pekinensis (1)
food fermentation metagenome (1)
Arabidopsis halleri (1)
food metagenome (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (112)
ENA (110)
geo (20)
MetaboLights (10)
pride (8)
iProX (4)
MassIVE (3)
PAXDB (2)
ExpressionAtlas (1)

Tissue

Leaf (5)
Root (2)
Plant cell (1)
Whole body (1)

Disease

Mock inoculated (1)

Technology Type

Mass spectrometry (9)
Mass Spectrometry (8)
Shotgun proteomics (5)
Gel-based experiment (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
HDMSE (1)

Instrument Platform

Illumina Genome Analyzer IIx (6)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina HiSeq 2000 (3)
Other (2)
Illumina HiSeq 2500 (2)
UPLC-LTQ-MS (2)
Agilent 5975E GC/MSD (Agilent) (2)
API 4000 QTRAP (AB Sciex) (2)
IPK PhenoSphere (1)
Agilent Technologies G2505B scanner (1)
Agilent G2505B (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina NovaSeq X (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Q Exactive (1)
Quattro micro API (Waters) (1)
TSQ Quantum XLS (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2011 (20)
2015 (17)
2014 (17)
2013 (13)
2009 (12)
2012 (11)
2010 (10)
2017 (7)
2016 (7)
2023 (6)
2008 (6)
2022 (5)
2021 (5)
2025 (4)
2019 (4)
2026 (3)
2020 (3)
2018 (3)
2007 (2)
2006 (1)

UNIPROT ID/AC

A0A078BWL0_BRANA (2)
A0A078C354_BRANA (2)
A0A078C5F6_BRANA (2)
A0A078CAM5_BRANA (2)
A0A078CBC4_BRANA (2)
A0A078CJJ5_BRANA (2)
A0A078CJY2_BRANA (2)
A0A078CUQ3_BRANA (2)
A0A078CXF9_BRANA (2)
A0A078D4W1_BRANA (2)
A0A078D7G6_BRANA (2)
A0A078D911_BRANA (2)
A0A078DAQ0_BRANA (2)
A0A078DBS4_BRANA (2)
A0A078DES1_BRANA (2)
A0A078DFR1_BRANA (2)
A0A078DGP8_BRANA (2)
A0A078DMP0_BRANA (2)
A0A078DNQ5_BRANA (2)
A0A078DQX4_BRANA (2)
A0A078DRK7_BRANA (2)
A0A078E950_BRANA (2)
A0A078EBD9_BRANA (2)
A0A078ECX4_BRANA (2)
A0A078EDI6_BRANA (2)
A0A078EFC4_BRANA (2)
A0A078EGM9_BRANA (2)
A0A078EGN5_BRANA (2)
A0A078EH92_BRANA (2)
A0A078EHJ4_BRANA (2)

CHEBI ID

CHEBI:29016 (4)
CHEBI:17620 (4)
CHEBI:25094 (4)
CHEBI:27386 (3)
CHEBI:17981 (3)
CHEBI:28757 (3)
CHEBI:18388 (3)
CHEBI:15584 (3)
CHEBI:16610 (3)
CHEBI:22660 (3)
CHEBI:15365 (3)
CHEBI:17497 (3)
CHEBI:30794 (3)
CHEBI:18237 (3)
CHEBI:17148 (3)
CHEBI:15428 (3)
CHEBI:17234 (3)
CHEBI:15356 (3)
CHEBI:22653 (3)
CHEBI:16449 (3)
CHEBI:27266 (3)
CHEBI:24898 (3)
CHEBI:16010 (3)
CHEBI:28044 (3)
CHEBI:16811 (3)
CHEBI:30763 (3)
CHEBI:16112 (3)
CHEBI:25017 (3)
CHEBI:6650 (3)
CHEBI:50202 (3)

Metabolite Name

Leucine (3)
Lysine (3)
Fructose (3)
Threonine (3)
Glucose (3)
Sucrose (3)
Thiouracil (2)
3-thioureidopropionic acid (2)
Ile Lys Ser (2)
Val Gly Val (2)
Hycanthone (2)
Lymecycline (2)
Cysteamine (2)
Cinnamic acid (2)
Cysteine (2)
Melezitose (2)
Medicanine (2)
Lactose (2)
Galactose (2)
4-hydroxybenzoic acid (2)
Glycerol (2)
Glycolic acid (2)
Ferulic acid (2)
Valine (2)
Cellobiose (2)
Thiamine (2)
Alanine (2)
D-Glucose-6-phosphate (2)
Glycine (2)
Mannitol (2)

First Public Date

2020 (15)
2021 (14)
2024 (13)
2025 (11)
2026 (10)
2015 (9)
2019 (8)
2014 (8)
2023 (6)
2013 (5)
2022 (4)
2017 (4)
2018 (2)
2016 (1)

Classification

viruses (7)

Study type

Transcription profiling by array (62)
RNA-seq of coding RNA (25)
RNA-seq of non coding RNA (14)
Plant - High-throughput sequencing (3)
ChIP-seq (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Plant - One-color microarray (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Other (1)

Release Date

2021 (50)
2022 (47)
2020 (45)
2023 (36)
2015 (35)
2019 (34)
2018 (31)
2025 (30)
2017 (26)
2016 (26)
2024 (26)
2014 (25)
2013 (23)
2011 (22)
2012 (15)
2009 (15)
2010 (13)
2008 (9)
2004 (6)
2026 (3)
2007 (3)
2006 (3)
2000 (2)
2002 (1)

Lab affiliation

Agriculture and Agri-Food Canada, London Research and Development Centre (1)
Department of Biological Sciences, University of Alberta (1)
EDyP (1)
HEXI University,No. 846, beicheng road, zhangye city, gansu province, China (1)
HeXi University,No. 846, beicheng road, zhangye city, gansu province (1)
Kunming Institute of Botany, CAS (1)
Pennsylvania State University (1)
US Department of Agriculture, Agricultural Research Service (USDA-ARS), Boyce Thompson Institute, Cornell University (1)

Tags

pathogen:virus (7)
pathogen (7)

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Characterisation and localisation of plant metabolites involved in pharmacophagy in the turnip sawfly

Several herbivorous insects consume certain metabolites from plants for other purposes than nutrition, such as defence. Adults of the turnip sawfly, Athalia rosae take up specific terpenoids, called clerodanoids, from Ajuga reptans. These metabolites are slightly modified by the...

2023-10-30 | MTBLS7508 | MetaboLights

Transcription profiling of Arabidopsis Potyvirus turnip mosaic virus infection stages

A model system of Potyvirus turnip mosaic virus and Arabidopsis was used in this experiment. GFP-tagged virus supplied a visualized marker for us to localize the viral infection foci and its expansion on leaf under UV light. Initially, we dissect an individual infection focus and its adjacent region...

ORGANISM(S): Arabidopsis thaliana

2006-12-01 | E-MEXP-509 | biostudies-arrayexpress

Roles and Programming of Arabidopsis ARGONAUTE Proteins During Turnip Mosaic Virus Infection

AGO protein immunoprecipitation was combined with high-throughput sequencing of associated small RNAs. AGO2, AGO10, and to a lesser extent AGO1 were shown to associate with siRNAs derived from silencing suppressor (HC-Pro)-deficient TuMV-AS9, but not with siRNAs derived from wild-type TuMV. Co-immun...

ORGANISM(S): Arabidopsis thaliana

2015-04-06 | E-GEOD-64911 | biostudies-arrayexpress

siRNAs 15-29 nucleotides long with 100 percent hit to Turnip mosaic virus clone GBR98

Mustard (Brassica juncea) was tested for Turnip mosaic virus infection. Small RNA of the plant was extracted and converted to DNA according to Ho, T., et al. (2006) Journal of Virological Methods 136:217-223, with primers modified to contain 454 adapter nucleotide sequences. The DNA then passed qua...

ORGANISM(S): Turnip mosaic virus

2008-09-11 | E-GEOD-12053 | biostudies-arrayexpress

Turnip succinylation modification

Quantitative succinyl-proteome profiling of turnip (Brassica rapa var. rapa) in response to cadmium stress.

ORGANISM(S): Brassica rapa var. rapa

2022-08-11 | PXD028098 | Pride