Umbilical cord - OmicsDI

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Repository

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Tissue

Umbilical cord (10)
Blood (10)
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Brain (5)
Placenta (3)
Trachea (2)
Globus pallidus (2)
Tongue (2)
Occipital lobe (2)
Lymph node (2)
Small intestine (2)
Penis (2)
Duodenum (2)
Uterine cervix (2)
Breast (2)
Colon (2)
Temporal lobe (2)
Spinal cord (2)
Stomach (2)
Pancreas (2)
Substantia nigra (2)
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Uterus (2)
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Putamen (2)
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Disease

Disease free (5)
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Advanced malignant tumors including, but not limited to, pancreatic cancer, colorectal cancer, liver cancer, gastric cancer, non-small cell lung cancer, breast cancer, etc (2)
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Neuromuscular pain (1)
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Parkinson's disease (1)
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Breast cancer (1)
Hepatocellular carcinoma (1)
Melanoma (1)
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MAS (1)
Advanced atherosclerosis (1)
None (1)
HCMV infected (primary) (1)
Anemia (1)
Intermediate and advanced malignant solid tumors (including colorectal cancer, lung cancer, esophageal cancer, stomach cancer, liver cancer, kidney cancer and malignant melanoma) (1)
Colon cancer (1)
Burkitt Lymphoma (1)
Lung disease (1)
Obesity (1)
Abnormality of prenatal development or birth (1)
Acute kidney failure (1)
Alpha thalassemia (1)
Alzheimer's disease (1)

Technology Type

Mass Spectrometry (58)
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Mass spectrometry (13)
Bottom-up proteomics (9)
SWATH MS (5)
ESI (4)
Mass spectrometry assay (3)
ILLUMINA, Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Illumina Genome Analyzer II, ILLUMINA (1)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina 450K-chip (methylation data) (1)
Illumina 450k (1)
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Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
All-ion fragmentation (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
Proteogenomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
NextSeq 500 (10)
Q Exactive (6)
Illumina HiSeq 2500 (5)
NextSeq 550 (4)
Illumina HiSeq 2000 (3)
Illumina HiSeq 3000 (3)
Agilent Microarray Scanner G2505C (2)
Agilent Hybridisation Oven G2545A (2)
Illumina Genome Analyzer II (2)
Ion Torrent S5 XL (2)
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LTQ Orbitrap Velos (2)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
PC (1)
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NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
Illumina HiSeq 4000 (1)
- (1)
LTQ Orbitrap (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)

Publication Date

2014 (118)
2013 (103)
2011 (100)
2010 (97)
2012 (91)
2015 (89)
2025 (80)
2016 (67)
2022 (66)
2023 (63)
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2008 (55)
2026 (48)
2021 (47)
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2009 (40)
2019 (33)
2007 (31)
2018 (30)
2017 (25)
2005 (17)
2006 (4)
2003 (2)
2004 (1)

CHEBI ID

CHEBI:15428 (8)
CHEBI:16811 (7)
CHEBI:28044 (6)
CHEBI:27897 (6)
CHEBI:17822 (5)
CHEBI:22660 (5)
CHEBI:18186 (5)
CHEBI:16704 (5)
CHEBI:18183 (5)
CHEBI:16113 (5)
CHEBI:15741 (5)
CHEBI:16977 (5)
CHEBI:30915 (5)
CHEBI:16335 (5)
CHEBI:16737 (5)
CHEBI:16919 (5)
CHEBI:16414 (5)
CHEBI:15756 (5)
CHEBI:30769 (5)
CHEBI:26271 (4)
CHEBI:22652 (4)
CHEBI:28300 (4)
CHEBI:16000 (4)
CHEBI:27266 (4)
CHEBI:29016 (4)
CHEBI:16857 (4)
CHEBI:17533 (4)
CHEBI:15891 (4)
CHEBI:28875 (4)
CHEBI:18237 (4)

Metabolite Name

Uridine (4)
Creatine (4)
Acetaminophen (3)
L-Alanine (3)
Dihydrothymine (3)
L-Kynurenine (3)
Taurine (3)
Adenosine (3)
Uric acid (3)
Cytidine (3)
Thymidine (3)
Creatinine (3)
Tryptophan (3)
L-Leucine (3)
L-Tyrosine (3)
Inosine (3)
Trans-4-Hydroxy-L-Proline (2)
N-Isovalerylglycine (2)
SM(d18:0/14:0) (2)
2,4-Dinitrophenol (2)
PC(18:0/18:0) (2)
Dehydroascorbic Acid (2)
SM(d18:1/12:0) (2)
D-Fructose (2)
Taurochenodeoxycholic acid (2)
Quinolinic Acid (2)
L-Aspartate (2)
L-Glutamic Acid (2)
Palmitoyl ethanolamide (2)
N,N-Dimethylguanosine (2)

First Public Date

2014 (114)
2024 (81)
2026 (76)
2025 (76)
2022 (64)
2023 (57)
2021 (43)
2019 (37)
2020 (36)
2018 (24)
2015 (22)
2017 (14)
2013 (12)
2016 (11)

Classification

bacteria (1)

Study status

Recruiting (2)
Completed (2)
Withdrawn (1)
Not yet recruiting (1)

Study type

Transcription profiling by array (525)
RNA-seq of coding RNA (63)
ChIP-seq (45)
Methylation profiling by array (42)
Unknown experiment type (8)
MicroRNA profiling by array (8)
Other (7)
Methylation profiling by high throughput sequencing (5)
RNA-seq of non coding RNA (5)
Transcription profiling by RT-PCR (4)
RNA-seq of coding RNA from single cells (4)
Human - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
RNAi profiling by array (3)
Genotyping by array (3)
Comparative genomic hybridization by array (3)
ATAC-seq (3)
Transcription profiling by SAGE (2)
ChIP-chip by tiling array (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Bisulfite-seq (2)
CUT&RUN (2)
RNA-seq of total RNA (2)
MicroRNA profiling by high-throughput sequencing (1)
Human - Methylation microarray (1)
One-color microarray (1)
Human - Single-cell sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
DNA-seq (1)

Release Date

2023 (427)
2025 (414)
2022 (412)
2021 (407)
2024 (323)
2020 (312)
2019 (230)
2018 (219)
2014 (201)
2015 (181)
2016 (177)
2017 (176)
2013 (165)
2012 (134)
2011 (123)
2010 (112)
2008 (57)
2009 (49)
2026 (47)
2007 (28)
2005 (18)
2006 (13)
2001 (2)
2003 (1)
2002 (1)
1999 (1)
1998 (1)

Lab affiliation

Inserm, U1016, Institut Cochin, Paris, France Cnrs, UMR8104, Paris, France Plateforme Proteomique 3P5, Université Paris Descartes, Sorbonne Paris Cité, France. (3)
All India Institute of Medical Sciences, New Delhi, India (2)
Biomedical Research Center, University Hospital Hradec Kralove, Czechia (1)
CNC - Center for Neuroscience and Cell Biology, University of Coimbra (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology, Stanford School of Medicine Stanford University USA (1)
Center for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain (1)
Center for Regeneration and Aging,BGI-haangzhou (1)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (1)
Chongqing Medical University (1)
Department of Cardiology, Smidt Heart Institute and Proteomics and Metabolomics Core Facility (1)
Department of Clinical Medicine, University of Tromsø 9037 Tromsø, Norway (1)
Department of Diagnostic Sciences, Ghent University, Ghent, Belgium. Cancer Research Institute Ghent (CRIG), Ghent, Belgium. (1)
Department of Environmental Sciences and Engineering, Gilling's School of Global Public Health, Univeristy of North Carolina at Chapel Hill (1)
Department of Hematopoiesis, Sanquin Research, Amsterdam, The Netherlands (1)
Department of Hepatobiliary Surgery, Xijing Hospital, Fourth Military Medical University, Xi’an, Shaanxi (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (1)
Department of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, the Netherlands. (1)
Department of Orthopedics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province, 430030, PR China (1)
Department of Pediatric Cardiology and Critical Care; Pulmonary Vascular Research Center; Hannover Medical School; Hannover; Germany (1)
Department of Rehabilitation Medicine, The Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China (1)
Division of Obstetrics and Gynecology, Department of Clinical Sciences Lund, Lund University, Lund, Sweden (1)
EDyP (1)
Faculty of Health Sciences, University of Beira Interior, Covilhã (1)
Gonçalo Moniz Institute, FIOCRUZ, Salvador, Brazil D'Or Institute for Research and Education (IDOR), Salvador, Brazil Center for Biotechnology and Cell Therapy, São Rafael Hospital, Salvador, Brazil (1)
Gonçalo Moniz Institute, Oswaldo Cruz Foundation (FIOCRUZ), Salvador, Brazil Center for Biotechnology and Cell Therapy, São Rafael Hospital, Salvador, Brazil D'Or Institute for Research and Education (IDOR), Salvador, Brazil (1)
Head of TIssue Engineering Group at the Departmnet of Dentistry (1)
Hellenic Cord Blood Bank, Biomedical Research Foundation Academy of Athens, Greece (1)
ISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain IGTP Institut d’Investigació Germans Trias i Pujol, Badalona, Spain (1)
Institute for Molecular Medicine I Medical Faculty Heinrich-Heine-University Duesseldorf Universitaetsstrasse 1 40225 Duesseldorf Germany (1)
Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China. (1)

Location

China (2)
United States (2)

Keyword

Fludarabine (2)
Chediak - Higashi Syndrome (1)
Severe Combined Immune Deficiency (SCID) (1)
Combined Variable Immune Deficiency (CVID) syndrome (1)
Dyskeratosis Congenita (DC) (1)
Mucopolysaccharidoses (1)
Hunter syndrome (MPS II) (1)
Alpha mannosidosis (1)
Hematopoietic Stem Cell Transplant (HSCT) (1)
Congenital transfusion dependent anemias (1)
Globoid cell leukodystrophy (1)
Hereditary diffuse leukoencephalopathy with spheroids (HDLS) (1)
X-linked Hyper IgM (XHIM) syndrome (1)
Hydroxyurea (1)
Thiotepa (1)
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Alemtuzumab (1)
Mycophenolic Acid (1)
Melphalan (1)
Cyclophosphamide (1)
Fludarabine phosphate (1)
Omenn Syndrome (1)
Bare Lymphocyte Syndrome (BLS) (1)
Combined Immune Deficiency (CID) syndromes (1)
Wiskott-Aldrich Syndrome (1)
Leukocyte adhesion deficiency (1)
Chronic granulomatous disease (CGD) (1)
IPEX syndrome (1)

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The bile acid metabolome in umbilical cord blood and meconium of healthy newborns: Distinct characteristics and implications (Umbilical cord blood analysis)

OBJECTIVE: To characterize the bile acid (BA) metabolomic profile of umbilical cord blood (UCB) and meconium in healthy newborns.

METHODS: Fifteen healthy newborns, which born in the Obstetrics Department of the Affiliated Hospital of Southwest Medical Univ...

2024-11-28 | MTBLS10266 | MetaboLights

Umbilical cord blood metabolome differs in relation to delivery mode, birth order and sex, maternal diet and possibly future allergy development in rural children

Allergy is one of the most common diseases among young children yet all factors that affect development of allergy remain unclear. In a small cohort of 65 children living in the same rural area of south-west Sweden, we have previously found that maternal factors, including prenatal diet, affect chil...

2020-12-18 | MTBLS2017 | MetaboLights

Human umbilical cord-derived mesenchymal stem cells ameliorate perioperative neurocognitive disorder by inhibiting inflammatory responses and activating BDNF/TrkB/CREB signaling pathway in aged mice

BACKGROUND: Perioperative neurocognitive disorder (PND) is a key complication affecting older individuals after anesthesia and surgery. Failure to translate multiple pharmacological therapies for PND from preclinical studies to clinical settings has necessitated the exploration o...

2023-07-25 | MTBLS7759 | MetaboLights

The bile acid metabolome in umbilical cord blood and meconium of healthy newborns: Distinct characteristics and implications (Meconium analysis)

OBJECTIVE: To characterize the bile acid (BA) metabolomic profile of umbilical cord blood (UCB) and meconium in healthy newborns.

METHODS: Fifteen healthy newborns, which born in the Obstetrics Department of the Affiliated Hospital of Southwest Medical Univ...

2024-11-28 | MTBLS10267 | MetaboLights

A multi-omic analysis of birthweight in newborn cord blood reveals new underlying mechanisms related to cholesterol metabolism

BACKGROUND: Birthweight reflects in utero exposures and later health evolution. Despite existing studies employing high-dimensional molecular measurements, the understanding of underlying mechanisms of birthweight remains limited.

METHODS: To investigate th...

2020-06-19 | MTBLS1684 | MetaboLights

Gene expression profile of mesenchymal stem cells from paired umbilical cord units: cord is different from blood

Mesenchymal stem cells (MSC) are multipotent cells which can be obtained from several adult and fetal tissues including human umbilical cord units. We have recently shown that umbilical cord tissue (UC) is richer in MSC than umbilical cord blood (UCB) but their origin and characteristics in blood a...

ORGANISM(S): Homo sapiens

2009-09-18 | E-GEOD-18134 | biostudies-arrayexpress

PROTEOMIC ANALYSIS OF THE UMBILICAL CORD IN FETAL GROWTH RESTRICTION AND PREECLAMPSIA

Fetal growth restriction (FGR) is associated with adverse perinatal outcomes. Pre-eclampsia (PreE) increases the associated perinatal morbidity and mortality. The structure of the umbilical cord in the setting of FGR and PreE has yet to be determined. This study aimed to examine chan...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-03-15 | MSV000087051 | MassIVE

Transcriptome changes affecting hedgehog and cytokine signalling in the umbilical cord in late pregnancy: implications for disease risk

BACKGROUND: Babies born at lower gestational ages or smaller birthweights have a greater risk of poorer health in later life. Both the causes of these sub-optimal birth outcomes and the mechanism by which the effects are transmitted over decades are the subject of extensive study. We investigated...

ORGANISM(S): Homo sapiens

2012-09-24 | E-GEOD-37100 | biostudies-arrayexpress

Expression data from human CD34+ HPC subpopulations isolated from umbilical cord blood (Haddad et al. Blood 104:3918, 2004)

We used microarrays to analyze the gene expression profile of CD34+CD45RA+CD7+, CD34+CD45RA+CD10+CD19- and CD34+CD45+CD7-CD10-CD19- HPCs isolated from umbilical cord blood CD34+CD45RA+CD7+(CD10-) and CD34+CD45RA+CD10+(CD7-CD19-) HPCs correspond respectively to prothymocytes and early pre-proB precur...

ORGANISM(S): Homo sapiens

2011-05-25 | E-GEOD-29522 | biostudies-arrayexpress

Proteomic profiling of human mesenchymal stem cells derived from umbilical cord or adipose tissue

We performed a proteomic profiling of human mesenchymal stem cells (hMSCs) derived from adipose tissue or umbilical cord.

ORGANISM(S): Homo sapiens (Human)

2018-07-11 | PXD009893 | Pride

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