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TranscriptomicsChromatin immunoprecipitation of yeast to identify genomic binding locations of yeast transcription machinary factors Reb1, Rpb3, Rpo21, Rsc9, Sua7 and Swr1
High-resolution genome-wide mapping of the yeast transcription machinery. ChIP-chip was performed to identify the genomic binding locations for each factor.

Processed data files are also available on the FTP server for this experiment.
ORGANISM(S): Saccharomyces cerevisiae 
2009-02-14 | E-MEXP-1676 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of yeast transcription machinary using oligonucleotide arrays
A canonical organization of the transcription pre-initiation complex and its regulators. High-resolution genome-wide mapping of the yeast transcription machinery was performed for each factor using ChIP-chip.
ORGANISM(S): Saccharomyces cerevisiae 
2009-02-15 | E-MEXP-1677 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of yeast to identify genes whose distribution of TBP and Sua7 was consistent with TFIIB (Sua7) mediated gene looping
ChIP-chip analysis of TBP and Sua7 was performed to identify genes whose distribution of TBP and Sua7 was consistent with TFIIB (Sua7) mediated gene looping. Two biological replicates were performed for each factor and the mock IP control.
ORGANISM(S): Saccharomyces cerevisiae 
2009-03-03 | E-MEXP-1584 | biostudies-arrayexpress
TranscriptomicsChIP-chip by array of yeast transcription factor binding sites under normal and heatshock conditions
An experiment was performed to determine the transcription factor binding site of yeast at room temperature and heat-shock growth conditions.
ORGANISM(S): Saccharomyces cerevisiae 
2011-02-23 | E-MTAB-311 | biostudies-arrayexpress
GenomicsChIP-Seq of yeast to survey transcription factor binding sites
An experiment was performed to determine the transcription factor binding site of yeast at room temperature.
ORGANISM(S): Saccharomyces cerevisiae 
2011-10-13 | E-MTAB-440 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Drosophila Schneider 2 cells using NELF-E and NELF-B antibodies
ChIP-chip analysis of GAGA factor and NELF in Drosophila S2 cells
ORGANISM(S): Drosophila melanogaster 
2008-04-04 | E-MEXP-1547 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Drosophila DNA to identify nucleosomes bound by RNA polymerase II
Crosslinked chromatin was digested with Micrococcal nuclease and immunopurified for Rpb3, a subunit of RNA Polyermase II. chIP'd DNA was hybridized to Drosophila tiling arrays and nucleosomes that were bound by Pol II were mapped.
ORGANISM(S): Drosophila melanogaster 
2008-05-20 | E-MEXP-1515 | biostudies-arrayexpress
TranscriptomicsChromatin immunopreciptitation of Drosophila DNA using antibodies against RMA polymerase II CTD repeats
Crosslinked chromatin from wild type flies was sonicated into small fragments, and used in ChIP reactions using a monoclonal antibody, 8WG16, against RNA polymerase II CTD repeats. Input material was removed prior to chIP, and a control chIP was incubated with normal rabbit IgG. The Input and IPed...
ORGANISM(S): Drosophila melanogaster 
2008-05-20 | E-MEXP-1520 | biostudies-arrayexpress
TranscriptomicsResistant response of leaves of upland cotton line Im216 to Xanthomonas campestris pv. malvacearum race 1
Gene expression profiling of upland cotton line Im216 to inoculation with Xanthomonas campestris pv. malvacearum race 1. Fifth or sixth leaves of the bacterial blight-resistant cotton line Im216, which had been grown in a plant growth chamber, were infiltrated with a suspension of about 5x10^6 colon...
ORGANISM(S): Gossypium hirsutum 
2010-07-01 | E-GEOD-2851 | biostudies-arrayexpress
TranscriptomicsMapping of mononucleosomal DNA in wild type Drosophila
Crosslinked chromatin from wild-type flies was digested with micrococcal nuclease. Mononucleosomal DNA was gel-purified and hybridized to Affymetrix tiling arrays.
ORGANISM(S): Drosophila melanogaster 
2008-05-20 | E-MEXP-1519 | biostudies-arrayexpress
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