Sort   by:  
 Page size 
ProteomicsSpectral prediction features as a solution for the search space size problem in proteogenomics
Proteogenomics approaches often struggle with the distinction between right and false peptide-to-spectrum matches as the database size enlarges. However, features extracted from tandem mass spectrometry intensity predictors can enhance the peptide identification rate and can provide extra confidence...
ORGANISM(S): Homo sapiens (Human) 
2021-03-26 | PXD022280 | Pride
Proteogenomics  spectrum predictor  nanopore sequencing  ribosome profiling  rna-seq  ms2pip  prosit  intensity features  machine learning  hct116  percolator  maxquant 
ProteomicsPROTEOFORMER 2.0: MS validation
PROTEOFORMER is a pipeline for generating a search space of candidate translation products based on ribosome profiling data. The pipeline was published in 2014, but since then, several features have been added. For this project, the PROTEOFORMER pipeline 2.0 was tested on human HCT116 and Jurkat cel...
ORGANISM(S): Homo sapiens (Human) 
2019-05-03 | PXD011353 | Pride
Jurkat Proteoformer Hct116 Msms 
Sort   by:  
 Page size