Verma A A - OmicsDI

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Unknown (4625)
Transcriptomics (84)
Proteomics (42)
Genomics (33)
Models (5)
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Genomic (1)

Organisms

Homo sapiens (67)
Mus musculus (32)
Andropogon gerardi (31)
Bacteria (31)
Bartonella quintana JK 31 (31)
Canis lupus familiaris (31)
Cnidaria (31)
Ensifer adhaerens (31)
Halictus scabiosae (31)
Human alphaherpesvirus 1 strain 17 (31)
Human alphaherpesvirus 1 strain KOS (31)
Human betaherpesvirus 5 (31)
Human herpesvirus 2 strain 186 (31)
Human immunodeficiency virus 1 (31)
Mesocricetus auratus (31)
Miscanthus x giganteus (31)
Mus musculus (31)
Panicum virgatum (31)
Platyhelminthes (31)
Saccharomyces cerevisiae (3)
Caenorhabditis elegans (2)
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mixed sample (1)
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Organisms

Mus musculus (5)

Repository

biostudies-arrayexpress (102)
pride (31)
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Tissue

Cell culture (8)
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Disease

Colon cancer (1)
Disease free (1)
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Technology Type

Mass Spectrometry (31)
Shotgun proteomics (16)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry (2)
Data-dependent acquisition (2)
Gel-based experiment (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq X (2)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina iScan (1)
Illumina HiSeq X (1)
6550 iFunnel Q-TOF LC/MS (1)
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Publication Date

2013 (22)
2012 (20)
2014 (18)
2016 (13)
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2017 (2)
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2007 (1)

UNIPROT ID/AC

P30560 (1)
P29995 (1)

ENSEMBL ID

NewID (1)

CHEBI ID

CHEBI:8832 (2)
CHEBI:173890 (2)
CHEBI:177599 (2)
CHEBI:182449 (2)
CHEBI:182253 (2)
CHEBI:182699 (2)
CHEBI:177514 (2)
CHEBI:177688 (2)
CHEBI:182667 (2)
CHEBI:1458 (2)
CHEBI:183730 (2)
CHEBI:41674 (2)
CHEBI:165502 (2)
CHEBI:177394 (2)
CHEBI:29735 (2)
CHEBI:168507 (2)
CHEBI:75457 (2)
CHEBI:64304 (2)
CHEBI:69081 (2)
CHEBI:17252 (2)
CHEBI:88595 (2)
CHEBI:165595 (2)
CHEBI:167578 (2)
CHEBI:89871 (2)
CHEBI:172380 (2)
CHEBI:165178 (2)
CHEBI:177477 (2)
CHEBI:174791 (2)
CHEBI:86989 (1)
CHEBI:33699 (1)

Metabolite Name

(-)-Rhododendrin (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
2-linoleoylglycerol (2)
1-Monopalmitoylglycerol (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-oleoyl-sn-glycero-3-phosphoethanolamine (2)
1-Tetradecylamine (2)
2-((2E)-3,7-Dimethyl-2,6-octadienyl)-5,6-dimethoxy-3-methyl-1,4-benzenediol (2)
2-(12-Tridecyn-1-yl)furan (2)
2,2,6,6-Tetramethyl-1-piperidinol (2)
2,3,4,9-Tetrahydro-1H-beta-carboline-1,3-dicarboxylic acid (2)
2,6-di-tert-butyl-4-ethylphenol (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)
Isobutyl benzoate (2)
3-Cyclooctyl-1,1-dimethylurea (2)
(9E,12E)-9,12-Octadecadienoic acid (2)

First Public Date

2014 (3)
2026 (1)
2024 (1)
2023 (1)
2022 (1)
2021 (1)
2018 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (4)
Computational model (1)

Lab affiliation

Chromosome and Plasmid Segregation Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India (2)
Functional Proteomics Laboratory, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, India (2)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (2)
1 College of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates 2 School of Dentistry, Cardiff University, Cardiff, United Kingdom (1)
1Singapore Institute for Clinical Sciences, Agency for Science, Technology and Research (A*STAR), Singapore 2 Lee Kong Chian School of Medicine, Nanyang Technological University (NTU), Singapore 3 Cardiovascular and Metabolic Disorders Program, Duke-NUS Medical School, Singapore 4Yong Loo Lin School of Medicine, National University of Singapore (NUS), Singapore 5 Department of Endocrinology, Tan Tock Seng Hospital (TTSH), Singapore (1)
Associate Professor, Department of Laboratory Medicine, UCSF (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
Chromosome and Plasmid Segregation Lab, Department of Biosciences and Bioengineering, IIT Bombay Mumbai, India (1)
Department of Biosciences, Durham University Durham, UK (1)
Department of Biotechnology,Mithibai College,India (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Physiology and Biophysics, University of Illinois at Chicago (1)
Department of Tropical Medicine, Medical Microbiology, and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA (1)
Division Chair of GI/Hepatology Mayo Clinic Rochester, MN USA 55905 (1)
Edinburgh Cancer Research Centre, Cell Signalling Unit, University of Edinburgh (1)
Functional Proteomics Laboratory, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, India. (1)
ICAR- National Bureau of Agriculturally Important Microorganisms, Kushmaur, Maunath Bhanjan, Mau, Uttar Pradesh, INDIA (1)
ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura-281122 (1)
Ingrid Asp Psoriasis Research Center, Department of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden (1)
Institute of Bioinformatics, 7th floor, Discover Building, International Tech Park, Bangalore, India (1)
Institute of Bioinformatics, International Technology Park, Bangalore-560066, India (1)
Lee Kong Chian School of Medicine, Nanyang Technological University Singapore (1)
NDRI, Proteomics lab, Karnal, Haryana India (1)
Nanyang Technological Univeristy (1)
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067 (1)
RECAMO, Masaryk Memorial Cancer Institute Zluty Kopec, Brno, Czech Republic (1)
Regional Centre for Biotechnology, Faridabad, India (1)
Saint Louis University (1)

IsPrivate

False (5)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

Study type

Transcription profiling by array (49)
RNA-seq of coding RNA (24)
ChIP-seq (14)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (3)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (592)
2021 (525)
2025 (511)
2023 (469)
2024 (457)
2020 (412)
2018 (302)
2019 (272)
2017 (218)
2016 (207)
2015 (141)
2014 (136)
2013 (107)
2012 (93)
2026 (59)
2011 (58)
2010 (44)
2009 (33)
2008 (26)
2007 (21)
2006 (13)
2005 (10)
2004 (6)
2003 (5)
1999 (3)
1997 (3)
2002 (2)
2001 (1)
2000 (1)

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Six new species of Aspidophorodon Verma, 1967 (Hemiptera, Aphididae, Aphidinae) from China.

Not available

S-EPMC9848890 | biostudies-literature

Genome wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer

Background: 5-hydroxymethylcytosine (5-hmC) is a recently discovered epigenetic modification that is altered in cancers. Genome wide assays for 5-hmC determination are needed as many of the techniques commonly used to assay 5-methylcytosine (5-mC), including conventional methyl-sensitive restriction...

ORGANISM(S): Homo sapiens

2013-07-30 | E-GEOD-42723 | biostudies-arrayexpress

A new species and two new records of <i>Indomasonaphis</i> Verma, 1971 (Hemiptera, Aphididae) from China.

Not available

S-EPMC12501634 | biostudies-literature

Withaferin A inhibits LFA-1-stimulated ZAP70 activity and T-cell motility

a steroidal lactone withaferin A (WFA) can inhibit T-cell motility, which is crucial for adaptive immune responses as well as autoimmune reactions. Tandem mass spectrometry identified WFA-interactome in human T-cells that were stimulated to migrate via cross-linking of the lymphocyte function-associ...

ORGANISM(S): Homo sapiens (Human)

2022-02-17 | PXD026508 | Pride

Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords

Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords This model is described in the article: Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. Verma A, Makadia H, Hoek JB, Ogunna...

2024-09-02 | BIOMD0000000834 | BioModels

Simulations of mutant p53 DNA binding domains reveal a novel druggable pocket.

Not available

S-EPMC6393305 | biostudies-literature

Importance of the Kinetic Energy Density for Band Gap Calculations in Solids with Density Functional Theory.

Not available

S-EPMC5423078 | biostudies-literature

Roles of computational modelling in understanding p53 structure, biology, and its therapeutic targeting.

Not available

S-EPMC6487789 | biostudies-literature

Acanthocephalans from freshwater fishes in northeast Thailand with the description of a new species of the subgenus <i>Acanthosentis</i> Verma & Dutta, 1929 (Acanthocephala, Quadrigyridae).

Not available