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ModelsChavez2009 - a core regulatory network of OCT4 in human embryonic stem cells
Chavez2009 - a core regulatory network of OCT4 in human embryonic stem cells A core OCT4-regulated network has been identified as a test case, to analyase stem cell characteristics and cellular differentiation. This model is described in the article: ...
2005-01-01 | MODEL1305010000 | BioModels
TranscriptomicsTranscription profling of human neuroblastoma samples to construct, validate and evalute a gene expression based classification of outcome of treatment
This set of 320 profiles was utilized to construct, validate and evaluate a gene-expression based classifier of outcome of neuroblastoma patients
ORGANISM(S): Homo sapiens 
2009-02-17 | E-TABM-38 | biostudies-arrayexpress
TranscriptomicsCASPAR survival analysis
This set of profiles was utilized to construct, validate and evaluate a gene-expression based classifier of outcome of neuroblastoma patients
ORGANISM(S): Homo sapiens 
2008-12-31 | E-MTAB-16 | biostudies-arrayexpress
GenomicsGlucocorticoid receptor profiling in IMR90,K562 and U2OS (ChIP-seq)
To identify the sequences responsible for recruitment of Glucocorticoid receptor (GR) to individual loci, we performed ChIP-seq and ChIP-exo that combines chromatin immunoprecipitation with an exonuclease digestion step. We performed these experiments in three cell lines : IMR90 (ATTC:CCL-186), U2O...
ORGANISM(S): Homo sapiens 
2015-02-25 | E-MTAB-2955 | biostudies-arrayexpress
TranscriptomicsMAQC 2 color
This set of profiles was utilized to construct, validate and evaluate a gene-expression based classifier of outcome of neuroblastoma patients
ORGANISM(S): Homo sapiens 
2010-11-01 | E-MTAB-161 | biostudies-arrayexpress
ProteomicsCharacterization of stromal cells isolated from endometriotic lesions
Endometriosis shows significant lesion heterogeneity, but pathophysiological mechanisms leading to differences in clinical presentation are poorly understood. Here we utilized primary stromal cells from different types of endometriotic lesions to better understand the molecular mechanisms that lead ...
ORGANISM(S): Homo sapiens (Human) 
2025-12-15 | PXD066685 | Pride
Eutopic and ectopic endometrial cells Endometriosis Endometrioma Superficial endometriosis Endometrium Endometriotic stromal cells Homo sapiens Deep endometriosis 
GenomicsChIP-Seq for ERK2/MAPK1 and ELK1 in human embryonic stem cells
The ERK/MAPK signal transduction cascade is one of the key pathways regulating proliferation and differentiation in development and disease. In human embryonic stem cells (hESCs), ERK signaling is required for their self-renewing property. Here we studied the convergence of the ERK signaling cascade...
ORGANISM(S): Homo sapiens 
2013-05-31 | E-MTAB-1565 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling by array after knockdown of ERK2 and ELK1 in human embryonic stem cells
The ERK/MAPK signal transduction cascade is one of the key pathways regulating proliferation and differentiation in development and disease. In human embryonic stem cells (hESCs), ERK signaling is required for their self-renewing property. Here we studied the convergence of the ERK signaling cascade...
ORGANISM(S): Homo sapiens 
2013-05-31 | E-MTAB-1583 | biostudies-arrayexpress
TranscriptomicsRenal Cell Carcinoma Differential Expression
We investigated the changes in gene expression accompanying the development and progression of kidney cancer using 31,500 element complementary DNA arrays. We measured expression profiles for paired neoplastic and non-cancerous renal epithelium samples from 37 individuals. Using an experimental desi...
ORGANISM(S): Homo sapiens 
2010-05-28 | E-GEOD-3 | biostudies-arrayexpress
ProteomicsEnhanced Media Optimize Bovine Myogenesis in 2D and 3D Models for Cultivated Meat Applications
Livestock farming and conventional meat production pose significant environmental, health, and animal welfare challenges. In seeking sustainable alternative solutions, cultivated meat technology typically utilizes differentiation of myogenic progenitor cells (MPCs) into muscle cells for in vitro mea...
ORGANISM(S): Bos taurus (Bovine) 
2025-07-24 | PXD051019 | Pride
Multiomics Cultivated meat Bovine 
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