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ProteomicsAlpine Willows (Salix, Salicaceae)
Contrasting levels of beta-diversity and underlying phylogenetic trends indicate different paths to chemical diversity in highland and lowland willow species Martin Volf*, Jing Vir Leong, Paola de Lima Ferreira, Tereza Volfova, Petr Kozel, Pavel Matos-Maravi, Elvira Horandl, Natascha D. Wagner, Niko...
ORGANISM(S): Salix Elaeagnos (ncbitaxon:386449) Salix Retusa (ncbitaxon:77066) Salix Viminalis (ncbitaxon:40686) Salix Breviserrata (ncbitaxon:1533360) Salix Acutifolia (ncbitaxon:1233969) Salix Fragilis (ncbitaxon:77063) Salix Foetida (ncbitaxon:470271) Salix Helvetica (ncbitaxon:470273) Salix Mielichhoferi Salix Alba (ncbitaxon:75704) Salix Triandra (ncbitaxon:77069) Salix Caprea (ncbitaxon:172267) Salix Lapponum (ncbitaxon:470272) Salix Caesia (ncbitaxon:470572) Salix Daphnoides (ncbitaxon:470274) Salix Waldsteiniana Salix Reticulata (ncbitaxon:75717) Salix Pentandra (ncbitaxon:75715) Salix Hastata (ncbitaxon:75710) Salix Rosmarinifolia (ncbitaxon:717491) Salix Myrtilloides (ncbitaxon:669809) Salix Aurita (ncbitaxon:470270) Salix Herbacea (ncbitaxon:77064) Salix Repens (ncbitaxon:467613) Salix Bicolor (ncbitaxon:1533359) Salix Purpurea (ncbitaxon:77065) Salix Glaucosericea Populus Tremula (ncbitaxon:113636) Salix Serpyllifolia (ncbitaxon:77067) Salix Cinerea (ncbitaxon:470278) 
2023-04-21 | MSV000091773 | MassIVE
UnknownHistopathology and clinical course of MOG-antibody-associated encephalomyelitis.
Not available
S-EPMC4369279 | biostudies-literature
TranscriptomicsTranscription profiling of human bronchioloalveolar lavage (BAL) not used for diagnostic purposes taken from patients with LF syndrome and SOS of stage II active disease
Cells from bronchioloalveolar lavage (BAL) not used for diagnostic purpose were taken from patients with LF syndrome and SOS of stage II active disease. The SOS samples were divided in two groups by the means of CD4+-/CD8+-cell ratio < 5 or > 5, respectively. At least five samples of each group were...
ORGANISM(S): Homo sapiens 
2007-04-25 | E-RZPD-23 | biostudies-arrayexpress
ProteomicsBiogenesis and DNA cargo of Dinoroseobacter shibae outer membrane vesicles suggests vesicle formation is coupled to replication
The Gram-negative photoheterotrophic bacterium Dinoroseobacter shibae is a member of the high abundant marine Roseobacter group. In the ocean, OMVs have about the same abundance as bacteria, a distinct depth distribution, and contain DNA from a variety of marine bacterial taxa. In the present study,...
ORGANISM(S): Dinoroseobacter shibae (strain DFL 12) 
2020-12-16 | PXD014351 | Pride
Dinoroseobacter shibae Gelc-ms/ms Outer membrane vesicles (omvs) 
ProteomicsA spiked human proteomic dataset from human osteogenic differentiated BMSCs and ASCs for use as a spectral library, for modelling pathways as well as protein mapping
This article describes a mass spectrometry data set generated from osteogenic differentiated bone marrow stromal cells (BMSCs) and adipose tissue derived stromal cells (ASCs) of a 24-year old healthy donor spiked with iRT peptides. Cells have been identified via FACS-Analysis positive for CD90 and C...
ORGANISM(S): Homo sapiens (Human) 
2019-10-22 | PXD015026 | Pride
Data-independent acquisition analysis Nanohplc-esi-ms/ms Osteogenic differentiated mesenchymal stem cells 
MetabolomicsPostoperative Metabolic Phenoreversion in Clear Cell Renal Cell Carcinoma

The ultimate goal of surgical treatment in cancer is to remove the tumor mass for restoring a healthy state. A 16-lipid panel that discriminated healthy controls from clear cell renal cell carcinoma (ccRCC) patients in a prior study was evaluated in the present work in paired-serum samples collec...

2023-01-02 | MTBLS3838 | MetaboLights
UnknownRole of Vitamin D in Preventing and Treating Selected Extraskeletal Diseases-An Umbrella Review.
Not available
S-EPMC7231149 | biostudies-literature
ProteomicsBiallelic loss-of-function variants of ZFTRAF1 cause neurodevelopmental disorder with microcephaly and hypotonia by impairing autophagy
Neurodevelopmental disorders have great clinical and genetic heterogeneity and are known to arise from dysfunction in components of diverse cellular pathways, the precise pathomechanism for the majority however remains elusive. We studied five patients from three unrelated families originating from ...
ORGANISM(S): Homo sapiens (Human) 
2024-10-17 | PXD044735 | Pride
Microcephaly Autophagy Zftraf1 
UnknownHLA Ligand Atlas DIA: extending the benign immunopeptidomics resource with increased sensitivity through data-independent acquisition mass spectrometry.
Not available
S-EPMC12406853 | biostudies-literature
ProteomicsThe HLA-Ligand-Atlas. A resource of natural HLA ligands presented on benign tissues
A use case of the benign HLA-Ligand-Atlas is the prioritization of tumor-associated targets for e.g. peptide vaccination. Based on three glioblastoma samples, we illustrated how many of these peptides are covered in the benign dataset. The experimental and computational workflow for the isolation an...
ORGANISM(S): Homo sapiens (Human) 
2021-04-16 | PXD020186 | Pride
Human Hla Glioblastoma Immunopeptidomics 
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