Wang David D - OmicsDI

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Unknown (1004)
Transcriptomics (173)
Genomics (125)
Proteomics (102)
Metabolomics (19)
Models (3)
Multiomics (3)
Genomic (2)

Organisms

Homo sapiens (201)
Mus musculus (64)
Mycobacterium tuberculosis SP7 (40)
Mycobacterium tuberculosis SP10 (40)
Mycobacterium tuberculosis SP13 (40)
Mycobacterium tuberculosis SP22 (40)
Chlamydomonas reinhardtii (40)
Enterococcus mundtii CRL35 (40)
Solanum lycopersicum (5)
Saccharomyces cerevisiae (5)
Rattus norvegicus (4)
Arabidopsis thaliana (4)
groundwater metagenome (3)
Danio rerio (3)
Escherichia coli K-12 (2)
Ovis aries (2)
Oryza sativa Japonica Group (2)
Candida albicans (2)
Delphinapterus leucas (1)
Viruses (1)
Rhipicephalus microplus (1)
Pimephales promelas (1)
Oryza sativa Indica Group (1)
Zea mays (1)
Mycobacterium tuberculosis (1)
Pseudomonas putida KT2440 (1)
Caenorhabditis elegans (1)
Escherichia coli (1)
Drosophila melanogaster (1)
Acyrthosiphon pisum (1)

Repository

biostudies-arrayexpress (181)
EGA (117)
MassIVE (42)
pride (40)
MetaboLights (16)
PeptideAtlas (12)
GNPS (3)
iProX (3)
PanoramaPublic (3)
BioModels (2)
dbGaP (2)
Cell Collective (1)
jPOST (1)
PAXDB (1)

Tissue

Brain (8)
Cell culture (8)
Lung (4)
Leaf (3)
Neutrophil (3)
Bone marrow (2)
Macrophage (2)
Blood serum (2)
Heart (2)
Blood plasma (2)
Root (2)
Epithelial cell (2)
Kidney (2)
Liver (2)
Brain (1)
Others (1)
Stromal cell of ovarian cortex (1)
Gastric gland (1)
Adipocyte cell line (1)
Blood-lymph (1)
Bile duct (1)
Colonic mucosa (1)
Mycelial cord (1)
Tongue squamous epithelium (1)
Aorta thoracica smooth muscle (1)
Preadipocyte (1)
Pancreas (1)
Placenta (1)
Esophagus (1)
Melanocyte (1)

Disease

Melanoma (2)
Parkinson's disease (2)
Brain cancer (2)
Osteoarthritis (1)
Sporadic basal-like breast cancer (1)
Benign nevi (1)
AIDS-KS, HIV+, nodular (late) stage (1)
"hepatocellular adenoma" (1)
Normal (1)
(-)ssRNA virus infectious disease (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Uveal melanoma (1)
Barrett's esophagus (1)
Peripheral primitive neuroectodermal tumor (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Malignant mesothelioma (1)
Chronic bronchitis (1)
Stomach cancer (1)
Childhood extraosseous osteosarcoma (1)
Retinoblastoma (1)
Irritable bowel syndrome (1)
Lung carcinoma (1)
Tongue squamous cell carcinoma (1)
Obesity (1)
Gastric adenocarcinoma (1)
Prostate adenocarcinoma (1)
Cholangiocarcinoma (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (25)
Mass spectrometry (16)
Bottom-up proteomics (5)
Top-down proteomics (3)
NMR spectroscopy (2)
Gel-based experiment (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina OncoArray (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2500 (1)
Affymetrix 6.0 (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
DiaPASEF (1)
SWATH MS (1)
Data-independent acquisition (1)
Data-dependent acquisition (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (15)
Q Exactive (8)
Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (6)
NextSeq 500 (5)
LTQ FT (5)
Orbitrap Fusion Lumos (5)
LTQ Orbitrap Elite (4)
LTQ Orbitrap (4)
Illumina HiSeq 1000 (3)
Q Exactive Plus (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Orbitrap Fusion (2)
Gas Chromatography MS - positive (2)
Exactive (Thermo Scientific) (2)
BD FACSARIA III (1)
Fluidigm C1 (1)
Illumina Genome Analyzer (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap XL (1)
MaXis (1)
Velos Plus (1)
LTQ Orbitrap Velos ETD (1)
Q-Exactive (1)
LTQ XL (1)
TripleTOF 6600 (1)
Orbitrap Eclipse (1)
Q Exactive HF (1)
Orbitrap Exploris 480 (1)

Publication Date

2015 (29)
2013 (29)
2012 (27)
2008 (23)
2014 (21)
2011 (20)
2010 (19)
2021 (17)
2019 (12)
2018 (11)
2017 (11)
2022 (11)
2024 (10)
2023 (9)
2016 (8)
2007 (7)
2020 (6)
2026 (6)
2009 (4)
2004 (3)
2025 (3)
2005 (2)
2006 (2)
2002 (1)

UNIPROT ID/AC

P48436 (1)
Q15797 (1)
Q14457 (1)
P37023 (1)
Q9UNA0 (1)
P16112 (1)
P01583 (1)
P45452 (1)
O15105 (1)
P02458 (1)
Q13950 (1)
Q15109 (1)
P08253 (1)
P07659 (1)
P00573 (1)
P00441 (1)
P42212 (1)
P25963 (1)
Q07812 (1)
P10415 (1)
P42574 (1)
Q04206 (1)
P01137 (1)
Q15796 (1)
Q13485 (1)
P36897 (1)
Q16539 (1)
MTG8R_MOUSE (1)
SPPL3_MOUSE (1)
TEN1_MOUSE (1)

ENSEMBL ID

ENSMUSG00000057465 (5)
ENSMUSG00000072849 (5)
ENSG00000170477 (2)
ENSMUSG00000098814 (1)
ENSMUSG00000096833 (1)
ENSMUSG00000094930 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000076591 (1)
ENSMUSG00000076586 (1)
ENSG00000229353 (1)
ENSG00000247315 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:30769 (8)
CHEBI:16708 (7)
CHEBI:15428 (7)
CHEBI:17750 (7)
CHEBI:29016 (7)
CHEBI:18012 (7)
CHEBI:16737 (7)
CHEBI:17596 (7)
CHEBI:17822 (6)
CHEBI:26271 (6)
CHEBI:25094 (6)
CHEBI:18237 (6)
CHEBI:22660 (6)
CHEBI:16811 (6)
CHEBI:18257 (6)
CHEBI:17724 (6)
CHEBI:17562 (6)
CHEBI:6650 (6)
CHEBI:16235 (6)
CHEBI:16335 (6)
CHEBI:17568 (6)
CHEBI:16010 (6)
CHEBI:15891 (6)
CHEBI:16449 (6)
CHEBI:32816 (6)
CHEBI:30915 (6)
CHEBI:33697 (1)
CHEBI:17535 (1)
CHEBI:26523 (1)
CHEBI:33699 (1)

Metabolite Name

Inosine (4)
Adenine (4)
Creatinine (4)
Adenosine (4)
Uracil (4)
Glycerol (4)
Orotidine (3)
Glycerol 3-phosphate (3)
Cholesterol (3)
Alpha-tocopherol (3)
2'-deoxyuridine (3)
2'-deoxycytidine (3)
Maltose (3)
5-oxoproline (3)
Uridine (3)
Thymine (3)
Thymidine (3)
Serine (3)
Proline (3)
Phosphocholine (3)
Malate (3)
Hypoxanthine (3)
Guanosine (3)
Gamma-aminobutyric acid (3)
Cytosine (3)
Cytidine (3)
Cystine (3)
Cysteine (3)
Cystathionine (3)
Citrulline (3)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Modification

4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (117)
RNA-seq of coding RNA (24)
ChIP-seq (8)
RNA-seq of non coding RNA (7)
Comparative genomic hybridization by array (5)
Unknown experiment type (3)
Other (3)
ChIP-chip by tiling array (2)
Plant - High-throughput sequencing (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Baseline (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Bisulfite-seq (1)
MicroRNA profiling by array (1)

Release Date

2022 (125)
2021 (123)
2025 (92)
2023 (88)
2020 (84)
2015 (82)
2019 (75)
2024 (74)
2018 (57)
2012 (54)
2014 (53)
2016 (48)
2013 (47)
2017 (44)
2011 (41)
2010 (33)
2008 (21)
2026 (16)
2009 (13)
2007 (8)
2006 (3)
2005 (2)
2004 (1)
2003 (1)

Lab affiliation

Agronomy College, Henan Agricultural University, China (2)
Department of Orthopaedics, Peking University Third Hospital (2)
State Key Laboratory of Quality Research in Chinese Medicine and Institute of Chinese Medical Sciences, University of Macau, Macau 999078 (1)
State Key Laboratory of Quality Research in Chinese Medicine and Institute of Chinese Medical Sciences, University of Macau, Macau (1)
National Key Discipline Laboratory, Department of Nutrition and Food Hygiene, School of Public Health, Harbin Medical University, Harbin, P. R. China (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA Children's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA. (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Children's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA. (1)
Assistant Professor DEPARTMENT OF OBSTETRICS & GYNAECOLOGY Faculty of Medicine The University of HOng Kong (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medical Sciences, Peking University, 38 Xueyuan Road, Beijing 100191, People’s Republic of China (1)
The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), Shenzhen 518020, China (1)
University of science and technology (1)
Weill Cornell Medicine (1)
Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China. (1)
College of Plant Science and Technology, Huazhong Agricultural University (1)
School of Pharmacy, Anhui Medical University, Hefei, China (1)
Acupuncture-moxibustion and Orthopedic College, Hubei University of Chinese Medicine, Wuhan, China (1)
Department for Ecogenomics and Systems Biology, University of Vienna, Austria (1)
Markus Ralser, Prof. Dr. Einstein Professor of Biochemistry Head, Institute of Biochemistry, Charité University Medicine, Berlin markus.ralser@charite.de Senior Group Leader, The Francis Crick Institute, London markus.ralser@crick.ac.uk (1)
School of Cellular and Molecular Medicine, University Walk, Bristol BS8 1TD (1)
Tobacco Research Institute of CAAS (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (1)
SULFAGING group; Leibniz Institute for Analytical Sciences - ISAS - eV. Dortmund, GERMANY (1)
Leonard P Ullmann Chair in Metabolic Systems Biology, The Charles Perkins Centre School of Life and Environmental Sciences and Sydney Medical School D17 - Charles Perkins Centre | The University of Sydney | NSW | 2006 (1)
Weill Cornell Medical College, New York City (1)
Department of Pharmacology, Tianjin Key Laboratory of Inflammatory Biology, The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Experimental Hematology, School of Basic Medical Sciences, Tianjin Medical University, Tianjin, China. (1)
Institute of Molecular Plant Biology (IMPB), Department of Biology, ETH Zurich (1)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (1)
Departments of Pediatrics and Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte CA 91010 (1)

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Vitamin D Binding Protein and the Biological Activity of Vitamin D.

Not available

S-EPMC6821678 | biostudies-literature

Hui2016 - Age-related changes in articular cartilage

Hui2014 - Age-related changes in articular cartilage This model is described in the article: Oxidative changes and signalling pathways are pivotal in initiating age-related changes in articular cartilage Wang Hui1, David A Young1, Andrew D Rowan1, Xin Xu2, Tim E Cawston1, Ca...

2024-09-02 | BIOMD0000000560 | BioModels

Molecular Analysis of Prognosis and Immune Infiltration of Ovarian Cancer Based on Homeobox D Genes.

Not available

S-EPMC9537619 | biostudies-literature

Associations Between Change in Total and Free 25-Hydroxyvitamin D With 24,25-Dihydroxyvitamin D and Parathyroid Hormone.

Not available

S-EPMC6126886 | biostudies-literature

Downregulation of integrin receptor signalling genes by EBV EBNA 3C

Comparsion of cellular gene expression between a control B lymphoma cell-line (BJAB pz2) stably transfected with an empty vector and a BJAB cell-line stably expressing Epstein-Barr virus EBNA 3C (BJAB E3C-4). These cell lines are described in Wang, F., C. Gregory, C. Sample, M. Rowe, D. Liebowitz, R...

ORGANISM(S): Homo sapiens

2012-03-13 | E-MEXP-3585 | biostudies-arrayexpress

Proteomics of cassava storage roots before and after shoot pruning

Cassava (Manihot esculenta Crantz) is a food security crop for approximately 800 million people, primarily in developing economies. Cassava root yield is determined by the allocation of photoassimilated carbon within the plant, yet there is limited molecular and biochemical information about source-...

ORGANISM(S): Manihot esculenta (Cassava) (Jatropha manihot)

2026-04-01 | PXD045690 | Pride

Estimated Impact Of Medically Tailored Meals On Health Care Use And Expenditures In 50 US States.

Not available

S-EPMC12919973 | biostudies-literature

KRAS mutation (G12V) expression by pBABE-Puro vector in NCI-H1703 cells

The goal of this study was to determine genes affected by expressing KRAS mutation (G12V) in NCI-H1703 cells This data was used in Meng Wang et. al. Cancer Research 2016 to determine the alterations of gene expression profiling associated with expression of KRAS mutation (G12V). The experiment uses ...

ORGANISM(S): Homo sapiens

2016-03-23 | E-GEOD-79486 | biostudies-arrayexpress

Pilot KOMP knockout mouse strains

This is a test case of D. West's RNA-seq from KOMP2 mutant strains

ORGANISM(S): Mus musculus

2015-12-28 | E-MTAB-3662 | biostudies-arrayexpress

Lessons from the COVID-19 pandemic and recent developments on the communication of clinical trials, publishing practices, and research integrity: in conversation with Dr. David Moher.

Not available

S-EPMC9383655 | biostudies-literature

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1428 Results

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