Wang He H - OmicsDI

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Unknown (16391)
Proteomics (504)
Transcriptomics (146)
Genomics (82)
Metabolomics (55)
Models (10)
Multiomics (3)

Organisms

Homo sapiens (240)
Mus musculus (76)
Rattus norvegicus (23)
Arabidopsis thaliana (19)
Escherichia coli (8)
Oryza sativa (7)
Zea mays (6)
groundwater metagenome (3)
Caenorhabditis elegans (3)
Oryctolagus cuniculus (2)
Macaca mulatta (2)
Glycine max (2)
Escherichia coli K-12 (1)
Dehalococcoides mccartyi 195 (1)
Rhodococcus opacus (1)
Sphingomonas paucimobilis (1)
uncultured organism (1)
Aspergillus flavus (1)
Brucella melitensis (1)
Aspergillus oryzae (1)
uncultured bacterium (1)
Brassica rapa subsp. chinensis (1)
Bombyx mori (1)
Bacillus thuringiensis (1)
Phaeodactylum tricornutum (1)
Oryza sativa Indica Group (1)
Streptomyces coelicolor A3(2) (1)
Medicago truncatula (1)
Pseudomonas aeruginosa PAO1 (1)
Oryza sativa Japonica Group (1)

Repository

pride (278)
biostudies-arrayexpress (172)
iProX (152)
PeptideAtlas (67)
EGA (55)
MetaboLights (53)
BioModels (10)
MassIVE (6)
GNPS (2)
jPOST (1)
ENA (1)

Tissue

Cell culture (66)
Liver (44)
Brain (20)
Liver (19)
Permanent cell line cell (12)
Epithelial cell (12)
Lung (10)
Blood plasma (9)
Kidney (9)
Heart (7)
Spleen (7)
Others (6)
HeLa cell (6)
Testis (6)
Whole body (6)
Leaf (6)
Hepatocyte (6)
Plant cell (5)
Macrophage (5)
Blood serum (5)
T cell (5)
Blood (5)
Lymph node (4)
Stem cell (4)
B cell (4)
Blood cell (4)
Colon (4)
Thyroid nodule (3)
Malignant cell (3)
Plasma Non-glyco (2)

Disease

Disease free (10)
Breast cancer (5)
Colon cancer (5)
Cardiovascular system disease (4)
Acute leukemia (4)
Prostate adenocarcinoma (3)
Liver cancer (3)
Thyroid cancer (2)
Brain disease (2)
Hepatocellular carcinoma (2)
Brain glioblastoma multiforme (2)
Cervix carcinoma (2)
Influenza (2)
Stomach carcinoma (2)
Heart disease (1)
Medullary thyroid carcinoma (1)
Enteritis (1)
Ankylosing spondylitis (1)
Ischemic stroke (1)
Hemorrhagic stroke (1)
Major depressive disorder (1)
Infantile hypotonia with psychomotor retardation and characteristic facies-3 (1)
Idiopathic pulmonary fibrosis (1)
Cerebrovascular disease (1)
Stroke (1)
Retinopathy of prematurity (1)
Stomach cancer (1)
Brain ischemia (1)
Severe acute respiratory syndrome (1)
Cholangiocarcinoma (1)

Technology Type

Mass Spectrometry (278)
Shotgun proteomics (146)
Mass spectrometry (47)
Bottom-up proteomics (45)
Affinity purification coupled with mass spectrometry proteomics (26)
Gel-based experiment (20)
Data-dependent acquisition (17)
Data-independent acquisition (13)
SWATH MS (10)
Top-down proteomics (8)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Mass spectrometry assay (5)
Affinity proteomics (5)
Olink affinity proteomics (4)
SRM/MRM (4)
All-ion fragmentation (3)
Proteogenomics (2)
DiaPASEF (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (23)
Liquid Chromatography MS - negative - reverse phase (21)
Liquid Chromatography MS - positive - hilic (6)
Gas Chromatography MS - positive (5)
Liquid Chromatography MS - negative - hilic (5)
Illumina HiSeq 2500 (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - alternating - reverse phase (4)
Q Exactive HF (3)
Liquid Chromatography MS - positive (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
TripleTOF 6600 (2)
Q Exactive (2)
Gas Chromatography MS - (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
GenePix 4000B [Axon Instruments] (1)
LTQ XL (1)
Orbitrap Eclipse (1)
TSQ Quantum XLS (Thermo Scientific) (1)
Flow injection analysis MS - (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Bruker (1)
Liquid Chromatography MS - (1)
MS Imaging - (1)
Exactive (Thermo Scientific) (1)
API 4000 QTRAP (AB Sciex) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - HILIC (1)

Publication Date

2022 (63)
2024 (62)
2025 (62)
2023 (53)
2021 (49)
2026 (49)
2013 (37)
2020 (36)
2010 (26)
2019 (25)
2012 (22)
2018 (21)
2014 (21)
2015 (18)
2016 (17)
2011 (16)
2017 (13)
2009 (9)
2005 (8)
2008 (5)
2006 (4)
2007 (3)
2004 (3)
2002 (1)
2001 (1)

UNIPROT ID/AC

P31327 (41)
P63261 (37)
P60709 (37)
B4E3A4 (37)
P25705 (36)
A5A3E0 (35)
P06576 (35)
O95257 (1)
P24522 (1)
O75293 (1)
P07659 (1)
P00573 (1)
P42212 (1)
P38936 (1)
P36507 (1)
O14807 (1)
P70392 (1)
O00750 (1)
P04085 (1)
P01127 (1)
Q9GZP0 (1)
Q9NRA1 (1)
Q15198 (1)
Q13153 (1)
P27361 (1)
Q13315 (1)
Q16539 (1)
P04049 (1)
P04637 (1)
Q00987 (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000247315 (3)
ENSG00000147251 (3)

CHEBI ID

CHEBI:30769 (17)
CHEBI:17596 (15)
CHEBI:17368 (15)
CHEBI:16040 (14)
CHEBI:17568 (14)
CHEBI:16704 (14)
CHEBI:15354 (14)
CHEBI:15428 (13)
CHEBI:16393 (13)
CHEBI:7916 (13)
CHEBI:17895 (13)
CHEBI:15756 (13)
CHEBI:16708 (12)
CHEBI:17154 (12)
CHEBI:18183 (12)
CHEBI:48131 (12)
CHEBI:18012 (12)
CHEBI:16737 (12)
CHEBI:27897 (12)
CHEBI:18344 (12)
CHEBI:16750 (11)
CHEBI:28875 (11)
CHEBI:15741 (11)
CHEBI:17821 (11)
CHEBI:16865 (11)
CHEBI:33697 (1)
CHEBI:17535 (1)
CHEBI:26523 (1)
CHEBI:16991 (1)
CHEBI:33699 (1)

Metabolite Name

Citric acid (12)
Uracil (11)
Uridine (11)
Palmitic acid (10)
Uric acid (10)
Hypoxanthine (10)
Azelaic acid (9)
Adenine (9)
Xanthine (9)
Stearic acid (8)
Inosine (8)
Kynurenic acid (7)
Fumaric acid (7)
Taurine (7)
Cholic acid (7)
Arachidonic acid (7)
Guanine (7)
Maltotriose (7)
Linoleic acid (7)
Myristic acid (7)
Creatinine (7)
L-Tyrosine (7)
Pyruvic acid (6)
Leucine (6)
Pyroglutamic acid (6)
Xanthurenic acid (6)
Ornithine (6)
Caffeic acid (6)
Pantothenic acid (6)
Indole (6)

First Public Date

2017 (1)

Modelling Approach

Ordinary differential equation model (10)

Lab affiliation

He JunJun (5)
Sun Yat-sen University (4)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (3)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan,Hubei 430062, China (3)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Zhejiang University (3)
Professor and Director Center of Proteomic Analysis BGI-Shenzhen (3)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Department of Clinical Pharmacy, University of Michigan (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
The University of Chicago (2)
Sequence database group (2)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
The First Affiliated Hospital of Fujian Medical University (2)
State Key Lab of Reproductive Medicine, Nanjing Medical University (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
Westlake University (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
Peking Union Medical College (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Lee Kong Chian School of Medicine, School of Biological Sciences, Nanyang Technological University, Singapore (2)
Howard Hughes Medical Institute Beth Israel Deaconess Medical Center Harvard Medical School (2)
St Jude Children's Research Hospital (2)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (2)
Basic medical college, Jiujiang University, China (1)

IsPrivate

False (10)

Model Flag

Non Miriam (4)

Modification

Not available (3)
-17.026549 (1)
15.994915 (1)
N6 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (77)
RNA-seq of coding RNA (38)
ChIP-seq (16)
RNA-seq of non coding RNA (11)
Methylation profiling by high throughput sequencing (10)
Transcription profiling by tiling array (5)
Comparative genomic hybridization by array (5)
Other (2)
MicroRNA profiling by array (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (2761)
2022 (2268)
2023 (2125)
2024 (2094)
2021 (1756)
2020 (1245)
2019 (807)
2018 (714)
2017 (599)
2016 (463)
2026 (386)
2015 (375)
2014 (256)
2013 (211)
2012 (147)
2011 (130)
2010 (102)
2009 (63)
2008 (27)
2007 (11)
2005 (9)
2006 (5)
2004 (3)
2003 (2)
2002 (2)
2001 (2)

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Theoretical evidence of H-He demixing under Jupiter and Saturn conditions.

Not available

S-EPMC11447227 | biostudies-literature

Transcriptomics of Bacillus thuringiensis Strain CT-43.

We investigated the gene expression and metabolic regulatory mechanisms associated with the high-level accumulation of ICPs by performing the transcriptomics analysis of B. thuringiensis strain CT-43, using Illumina high throughout sequencing (RNA-seq) technique. The bacterial cells were collected a...

ORGANISM(S): Bacillus thuringiensis

2013-04-17 | E-GEOD-39479 | biostudies-arrayexpress

A proteomics of gills approach to understanding salinity adaptation of Scylla paramamosain

Scylla paramamosain (Crustacea) is a commercially important euryhaline species distributed along the coast of southern China and other Indo-Pacific countries. However, a sudden variation in salinity will cause injury or even death of S. paramamosain. In this paper, we simulated a sudden decrease in ...

ORGANISM(S): Scylla paramamosain

2018-07-31 | PXD009179 | Pride

Deep proteomic and phosphoproteomic profiling of DIPG responses to radiation therapy

Different DIPG tumor models have different responses to radiation therapy, which can be identified by quantitative proteomics/phospho-proteomics approach

ORGANISM(S): Homo sapiens (Human)

2024-05-21 | PXD028285 | Pride

Cancer Radiation therapy Phosphoproteome Dipg Proteome

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo, part 3

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo