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TranscriptomicsMolecular profiling of breast cancer cell lines defines relevant tumor models (aCGH)
Breast cancer cell lines have been used widely to investigate breast cancer pathobiology and new therapies. Breast cancer is a molecularly heterogeneous disease, and it is important to understand how well and which cell lines best model that diversity. In particular, microarray studies have identi...
ORGANISM(S): Homo sapiens 
2010-06-24 | E-GEOD-13914 | biostudies-arrayexpress
TranscriptomicsListeria monocytogenes Transcriptome with RNA-Seq
The stationary phase stress response transcriptome of the human bacterial pathogen Listeria monocytogenes was defined using RNA sequencing (RNA-Seq) with the Illumina Genome Analyzer. Specifically, bacterial transcriptomes were compared between stationary phase cells of L. monocytogenes 10403S and ...
ORGANISM(S): Listeria monocytogenes 
2010-01-05 | E-GEOD-15651 | biostudies-arrayexpress
TranscriptomicsMolecular profiling of breast cancer cell lines defines relevant tumor models
This SuperSeries is composed of the following subset Series: GSE13914: Molecular profiling of breast cancer cell lines defines relevant tumor models (aCGH) GSE15361: Molecular profiling of breast cancer cell lines defines relevant tumor models (gene expression) Refer to individual Series
ORGANISM(S): Homo sapiens 
2010-06-25 | E-GEOD-15376 | biostudies-arrayexpress
TranscriptomicsMolecular profiling of breast cancer cell lines defines relevant tumor models (gene expression)
Summary: Breast cancer cell lines have been used widely to investigate breast cancer pathobiology and new therapies. Breast cancer is a molecularly heterogeneous disease, and it is important to understand how well and which cell lines best model that diversity. In particular, microarray studies ha...
ORGANISM(S): Homo sapiens 
2010-06-24 | E-GEOD-15361 | biostudies-arrayexpress
TranscriptomicsGenome-wide CRISPR knockout screen in Huh7.5.1 human hepatocytes for the identification of host factors of hepatitis A virus
A knockout cell library in Huh7.5.1 cells was generated by introducing a genome-scale CRISPR library (GeCKOv2, Addgene #1000000049) and subjected to hepatitis A virus infection (HM175/18f) to isolate virus-resistant mutant cells. Genomic DNA was isolated from the original and virus-selected mutant c...
ORGANISM(S): Homo sapiens 
2020-01-19 | E-MTAB-8646 | biostudies-arrayexpress
GenomicsASCL1 is a lineage oncogene providing therapeutic targets for high-grade neuroendocrine lung cancers
ChIP-Seq analysis performed on 5 ASCL1(+) cell lines and 2 ASCL1 (-) cell lines in order to understand the transcriptome of ASCL1 as it pertains to high-grade neuroendocrine lung cancers 5 ASCL1(+) lung cancer cell lines and 2 ASCL1(-) lung cancer cell lines were compared using ChIP-Seq analysis
ORGANISM(S): Homo sapiens 
2014-10-01 | E-GEOD-61197 | biostudies-arrayexpress
ProteomicsHuman non-small cell lung cancer cell line NCI-H661 DPPA2-4 immunoprecipitation mass spectrometry (LC-MSMS)
We performed endogenous DPPA2/4 immunoprecipitations from whole cell lysates of the human non-small cell lung cancer cell line NCI-H661, followed by LC-MS/MS to identify enriched proteins.
ORGANISM(S): Homo sapiens (Human) 
2026-03-31 | PXD070581 | Pride
Lung Dppa4 Nci-h661 Immunoprecipitation Dppa2 Human 
UnknownPostoperative vascular complications in unrecognised Obstructive Sleep apnoea (POSA) study protocol: an observational cohort study in moderate-to-high risk patients undergoing non-cardiac surgery.
Not available
S-EPMC3902377 | biostudies-literature
ProteomicsHuman non-small cell lung cancer cell line NCI-H661 DPPA2-4 rapid immunoprecipitation mass spectrometry (RIME, LC-MSMS)
To investigate DPPA2/4 bound proteins on chromatin we performed rapid immunoprecipitation mass spectrometry (RIME) following double crosslinking of chromatin in NCI-H661 non-small cell lung cancer cells clonal cell lines (Wild Type clones c51 & c52, DPPA2 knockout clones c41 & c42, DPPA4 knockout cl...
ORGANISM(S): Homo sapiens (Human) 
2026-03-31 | PXD070627 | Pride
Rime Dppa4 Non small cell lung cancer Ncih661 Dppa2 Human 
TranscriptomicsMicroarray analysis of striatal tissue of wild type and Ezh1/Ezh2 dKO mice at 6 weeks, 3 months, and 6 months
Normal brain function critically depends on the interaction between highly specialized neurons that operate within anatomically and functionally distinct brain regions. The fidelity of neuronal specification is contingent upon the robustness of the transcriptional program that supports the neuron ty...
ORGANISM(S): Mus musculus 
2016-07-29 | E-GEOD-84243 | biostudies-arrayexpress
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