Wen Bo B - OmicsDI

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Unknown (66)
Proteomics (35)
Transcriptomics (10)
Metabolomics (7)
Multiomics (6)
Genomics (1)
Other (1)

Organisms

Homo sapiens (29)
Schizophyllum commune H4-8 (4)
Mycobacterium tuberculosis SP7 (4)
Oryza sativa Japonica Group (4)
Crotalus durissus terrificus (4)
Eriocheir sinensis (4)
Candidatus Endoriftia persephonae (4)
Mycobacterium tuberculosis SP10 (4)
Mycobacterium tuberculosis SP13 (4)
Cotesia typhae (4)
Mycobacterium tuberculosis SP22 (4)
Cepaea nemoralis (4)
Enterobacter ludwigii (4)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (4)
Olea europaea (4)
Chlamydomonas reinhardtii (4)
Lama (4)
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Wolbachia sp. wMelPop (4)
Pyricularia oryzae P131 (4)
Enterococcus mundtii CRL35 (4)
Pongo pygmaeus (4)
Oncorhynchus tshawytscha (4)
Pseudomonas canadensis (4)
Strongylocentrotus purpuratus (4)
Mus musculus (2)
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Drosophila melanogaster (1)
Saccharomyces cerevisiae (1)

Repository

PeptideAtlas (16)
biostudies-arrayexpress (10)
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pride (4)
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Tissue

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Disease

Not Available (1)

Technology Type

Mass spectrometry (7)
Mass Spectrometry (4)
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Olink affinity proteomics (1)
Affinity proteomics (1)
Bottom-up proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (14)
MS:1000031 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Q Exactive (2)
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Instrument (1)
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Publication Date

2015 (14)
2009 (4)
2023 (4)
2016 (4)
2010 (3)
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2018 (2)
2012 (1)
2011 (1)
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2026 (1)

UNIPROT ID/AC

Q9C075 (16)
Q99456 (16)
Q92764 (16)
Q8N1N4 (16)
Q86Y46 (16)
Q7RTS7 (16)
Q6KB66 (16)
Q15323 (16)
Q14532 (16)
Q14525 (16)
Q3SY84 (16)
Q14CN4 (16)
Q04695 (16)
Q01546 (16)
O75694 (16)
O14556 (16)
P35222 (16)
Q7Z3Z0 (16)
Q7Z3Y7 (16)
Q5XKE5 (16)
Q14974 (16)
P84077 (16)
P62241 (16)
P61204 (16)
P52209 (16)
Q9P1U1 (16)
Q9NSB2 (16)
Q9H4B7 (16)
Q9H0C2 (16)
Q9BYX7 (16)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (8)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:73218 (3)
CHEBI:27410 (3)
CHEBI:16393 (3)
CHEBI:17568 (3)
CHEBI:72737 (3)
CHEBI:27471 (3)
CHEBI:73229 (2)
CHEBI:40813 (2)
CHEBI:41879 (2)
CHEBI:29023 (2)
CHEBI:28315 (2)
CHEBI:9347 (2)
CHEBI:133176 (2)
CHEBI:71464 (2)
CHEBI:32389 (2)
CHEBI:30660 (2)
CHEBI:70979 (2)
CHEBI:82966 (2)
CHEBI:22470 (2)
CHEBI:30831 (2)
CHEBI:89182 (2)
CHEBI:17023 (2)
CHEBI:70959 (2)
CHEBI:70989 (2)
CHEBI:40410 (2)
CHEBI:17033 (2)
CHEBI:28238 (2)
CHEBI:19660 (2)
CHEBI:16390 (2)
CHEBI:33508 (2)

Metabolite Name

LysoPC(16:0) (2)
Piperine (2)
N1-Methyl-2-pyridone-5-carboxamide (2)
Kynurenine (2)
Uracil (2)
Melibiose (2)
Isokobusone (2)
Sphingosine (2)
Lithocholic acid glycine conjugate (2)
L-Histidine (2)
Riboflavin (2)
Pseudouridine (2)
Methylprednisolone (1)
Lansoprazole (1)
Pentoic acid* (1)
Domperidone (1)
PA(38:4) (1)
PA(40:6) (1)
PC (17:2(9Z,12Z)/0:0) (1)
LysoPC (17:1) (1)
LysoPC (17:0) (1)
PKODiA-PC (1)
PE(12:0/16:0) (1)
Ergosta-5,7,24(28)-trien-3beta-ol (1)
Ticlopidine (1)
Amphotericin B (1)
PI(18:1/20:3) (1)
PI(18:1/18:2) (1)
PI(18:0/22:4) (1)
PI(18:0/20:2) (1)

Modification

15.994915 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (5)
ChIP-chip by tiling array (3)
Methylation profiling by array (2)

Release Date

2025 (10)
2022 (9)
2021 (9)
2024 (8)
2023 (8)
2019 (6)
2020 (5)
2009 (4)
2018 (4)
2010 (3)
2016 (3)
2026 (2)
2017 (2)
2013 (1)
2012 (1)
2011 (1)

Lab affiliation

BGI-Shenzhen (1)
Division of Pediatric Gastroenterology, Department of Pediatrics, Stanford University, Palo Alto, CA, 94304, USA. (1)
BGI-shenzhen (1)
Proteomics (1)

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Chip-chip from Human Pulmonary Fibroblasts with H3K9me2 antibody

Histone modification H3K9me2 is associated heterochromatin and gene silencing, but the relationship between DNA methylation and H9K9me2 haven’t been checked in a genome-wide scale. This dataset was generated to compare with genome-wide DNA methylation data. Genome-wide distribution of H3K9me2 in hum...

ORGANISM(S): Homo sapiens

2011-08-28 | E-GEOD-29381 | biostudies-arrayexpress

Chip-chip from human ES cells (H1), iPS cells (iPSC38), astrocytes (HA) and aortic endothelial cells (HAEC) with H3K9me2 antibody

Histone modification H3K9me2 is associated with gene silencing and forming large heterochromatin domains. But the micro-structure within large H3K9me2 domains and their relationship with DNA methylation remains unclear. This dataset was generated to compare with genome-wide DNA methylation data. Gen...

ORGANISM(S): Homo sapiens

2013-02-17 | E-GEOD-37335 | biostudies-arrayexpress

Temperature-dependent Proteome Study of Thermoanaerobacter tengcongensis

Comprehensive and quantitative information of the thermophile proteome is an important source for understanding of the survival mechanism under high growth temperature. Thermoanaerobacter tengcongensis (T. tengcongensis), a typical anaerobic thermophilic eubacterium, was selected to quantitatively e...

ORGANISM(S): Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis)

2013-08-13 | PXD000264 | Pride

Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations

OBJECTIVE: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM).

METHOD: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid c...

2023-10-30 | MTBLS7753 | MetaboLights

Lipidomics profiling reveals the role of glycerophospholipid metabolism in psoriasis

Psoriasis is a common and chronic inflammatory skin disease complicated by genetic-environmental interactions. Although genomic, transcriptomic and proteomic analyses have been performed to investigate the pathogenesis of psoriasis, the role of metabolites in psoriasis, particularly of lipids, remai...

2017-08-22 | MTBLS408 | MetaboLights

Large organized chromatin K9-modifications (LOCKs) distinguish differentiated from embryonic stem cells

Higher eukaryotes must adapt a totipotent genome to specialized cell types with a stable but limited repertoire of functions. One potential mechanism for lineage restriction is changes in chromatin, and differentiation-related chromatin changes have been observed for individual genes. We have taken ...

ORGANISM(S): Mus musculus

2009-01-17 | E-GEOD-13445 | biostudies-arrayexpress

Recombinant adenovirus containing hyper-interleukin-6 and hepatocyte growth factor ameliorates acute-on-chronic liver failure in rats.

Not available

S-EPMC4837431 | biostudies-literature

Synthetic yeast genome project

The experiment aimed to study the proteome variation in a yeast strain (YS031), which chromosome II was artificially synthezied, compared with the wild type strain (BY4741). Proteins were extracted from the yeast cells and digested with trypsin. The peptides were label with iTRAQ, separated with 2D ...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2018-10-27 | PXD003435 | Pride

Saccharomyces cerevisiae Itraq Lc-ms/ms

CN-CHPP 2015 Testis Project - Tissue-Based Proteogenomics Reveals that Human Testis Endows Plentiful Missing Proteins

The testis tissue-based trans-omics was a feasible approach to find more missing proteins (MPs) because it was reported higher gene expression found in testis tissues. Three testis tissues and two protein separation strategies were selected to quantitatively evaluate gene expression abundance at the...

ORGANISM(S): Homo sapiens (Human)

2015-11-03 | PXD002179 | Pride

Transcriptome Testis Chromosome-centric human proteome project Proteome Missing proteins

Classical complement activation in light and heavy chain deposition disease with acquired cutis laxa and bronchiolitis obliterans: a case report of monoclonal gammopathy of clinical significance.