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TranscriptomicsTranscription profiling of Bordetella bronchiseptica virulent swine isolate KM22, wild type and fhaB and prn deletion mutants
B. bronchiseptica strain KM22, a virulent swine isolate, and strains TN27 and TN28, fhaB and prn deletion mutants of KM22, respectively, were cultured in Stainer-Scholte broth and grown at 37C with shaking at 275 rpm until an OD600 of 0.8 was reached. RNA extracted from KM22 was then compared to RNA...
ORGANISM(S): Bordetella bronchiseptica 
2008-09-20 | E-MEXP-1558 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wild type and hog1 Candida albicans subjected to environmental stresses that are known to activate the Hog1 Stress-activated Protein Kinase
Based on studies in S. pombe (Chen et al., 2003), we predicted that conditions which activate C. albicans Hog1 would result in the induction of a common set of genes that are regulated by this SAPK (Smith et al., 2004). Hence in this study we compared the global transcriptional responses of wild-typ...
ORGANISM(S): Candida albicans 
2007-07-05 | E-MEXP-1134 | biostudies-arrayexpress
TranscriptomicsDm_Kc167_TotalRNA_p200_002-004-006_38bp
modENCODE_submission_51 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing ...
ORGANISM(S): Drosophila melanogaster 
2010-04-09 | E-GEOD-16273 | biostudies-arrayexpress
TranscriptomicsDm_1182-4H_TotalRNA_p200_038-040-042_38bp
modENCODE_submission_40 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing ...
ORGANISM(S): Drosophila melanogaster 
2010-04-09 | E-GEOD-16269 | biostudies-arrayexpress
TranscriptomicsDm_GM2_TotalRNA_p200_008-010-012_38bp
modENCODE_submission_50 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing ...
ORGANISM(S): Drosophila melanogaster 
2010-04-09 | E-GEOD-16272 | biostudies-arrayexpress
TranscriptomicsDm_DmD32_TotalRNA_p200_164-166-168_38bp
modENCODE_submission_59 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing ...
ORGANISM(S): Drosophila melanogaster 
2010-04-09 | E-GEOD-16281 | biostudies-arrayexpress
TranscriptomicsDm_CME-L1_TotalRNA_p200_086-088-090_38bp
modENCODE_submission_48 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing ...
ORGANISM(S): Drosophila melanogaster 
2010-04-09 | E-GEOD-16270 | biostudies-arrayexpress
TranscriptomicsDm_CME-W1-Cl.8p_TotalRNA_p200_060-062-064_38bp
modENCODE_submission_49 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing ...
ORGANISM(S): Drosophila melanogaster 
2010-04-09 | E-GEOD-16271 | biostudies-arrayexpress
TranscriptomicsDm_DmD17-c3_TotalRNA_p200_194-196-198_38bp
modENCODE_submission_55 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing ...
ORGANISM(S): Drosophila melanogaster 
2010-04-09 | E-GEOD-16277 | biostudies-arrayexpress
ProteomicsRegulatory phosphosite on Mec1 and control of RNAP11 and PIII during replication stress
Yeast sensor checkpoint kinase Mec1 is phosphorylated at Ser1991 upon HU replication stress. The phospho-accepter mutant (mec1-S1991A) confers HU sensitivity and synthetic sickness with the mutants that aggravate replication and transcription collision. To understand how the entire chromatin proteom...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-09-28 | PXD027337 | Pride
Lc-msms Mec1 Yeast Chromatome Phosphoproteomics Replication stress 
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